RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 RNF6Q9Y252 685 aa13.13□□□□□ -0.31
PRPF39-204ENST00000553605 ARL5AQ9Y689 179 aa13.13□□□□□ -0.31
PRPF39-204ENST00000553605 AKAP6Q13023 2319 aa13.13□□□□□ -0.31
PRPF39-204ENST00000553605 SNRNP200O75643 2136 aaKnown RBP13.13□□□□□ -0.31
PRPF39-204ENST00000553605 PPP1R12AO14974 1030 aaPredicted RBP13.12□□□□□ -0.31
PRPF39-204ENST00000553605 MED26O95402 600 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 HEXBP07686 556 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 CD46P15529 392 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 XIAPP98170 497 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 TUBA3CQ13748 450 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 WASHC2DQ5SRD0 308 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 TUBA3EQ6PEY2 450 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 CLYBLQ8N0X4 340 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 BEST3Q8N1M1 668 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 MARVELD2Q8N4S9 558 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 WFDC11Q8NEX6 87 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 RMND5BQ96G75 393 aaPredicted RBP13.12□□□□□ -0.31
PRPF39-204ENST00000553605 SCMH1Q96GD3 660 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 MRGPRX2Q96LB1 330 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 IMMP1LQ96LU5 166 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 ZNF354BQ96LW1 612 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 FAM96AQ9H5X1 160 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 INTS7Q9NVH2 962 aaKnown RBP13.12□□□□□ -0.31
PRPF39-204ENST00000553605 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.12□□□□□ -0.31
PRPF39-204ENST00000553605 MKL2Q9ULH7 1088 aa13.12□□□□□ -0.31
PRPF39-204ENST00000553605 LOC102723996A0A087X1L8 192 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 FAM237BA0A1B0GVD1 139 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 RCCD1A6NED2 376 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 LRRC53A6NM62 1247 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 C2orf81A6NN90 581 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 RASGRF2O14827 1237 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 KDM1AO60341 852 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 SRPX2O60687 465 aaPredicted RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 HEXAP06865 529 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 FBLP22087 321 aaKnown RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 KDELR1P24390 212 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 PTPN3P26045 913 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 ACADLP28330 430 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 CD68P34810 354 aaPredicted RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 CD96P40200 585 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 VSX2P58304 361 aaPredicted RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 OR1C1Q15619 314 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 ACER2Q5QJU3 275 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 SPINK14Q6IE38 97 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 FIGLAQ6QHK4 219 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 NAPRTQ6XQN6 538 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 CAMKMTQ7Z624 323 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 CPNE8Q86YQ8 564 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 TMEM178AQ8NBL3 297 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 FAM98AQ8NCA5 519 aaKnown RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 OR5K2Q8NHB8 316 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 RND1Q92730 232 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 SLC22A18Q96BI1 424 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 MBD6Q96DN6 1003 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 OLFM3Q96PB7 478 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 TUBB6Q9BUF5 446 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 YIPF2Q9BWQ6 316 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 THAP2Q9H0W7 228 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 LUC7LQ9NQ29 371 aaKnown RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 ANKRD10Q9NXR5 420 aa13.11□□□□□ -0.31
PRPF39-204ENST00000553605 LIMA1Q9UHB6 759 aaKnown RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 FN1P02751 2386 aaKnown RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 FBN1P35555 2871 aaKnown RBP13.11□□□□□ -0.31
PRPF39-204ENST00000553605 KLK8O60259 260 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 AP2A1O95782 977 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 GSTM1P09488 218 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 NFKB1P19838 968 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 PTGS2P35354 604 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 PRKCIP41743 596 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 TAS2R40P59535 323 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 GSTM4Q03013 218 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 TAF1AQ15573 450 aaPredicted RBP13.1□□□□□ -0.31
PRPF39-204ENST00000553605 FCRLBQ6BAA4 426 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 NPNTQ6UXI9 565 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 GALNTL5Q7Z4T8 443 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 ACRBPQ8NEB7 543 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 IPMKQ8NFU5 416 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 FAM57AQ8TBR7 257 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.1□□□□□ -0.31
PRPF39-204ENST00000553605 RAPGEF5Q92565 580 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 UTP23Q9BRU9 249 aaKnown RBP13.1□□□□□ -0.31
PRPF39-204ENST00000553605 CLEC4MQ9H2X3 399 aaPredicted RBP13.1□□□□□ -0.31
PRPF39-204ENST00000553605 ZDHHC3Q9NYG2 299 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 AIPL1Q9NZN9 384 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 LRFN1Q9P244 771 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 STOX2Q9P2F5 926 aaPredicted RBP13.1□□□□□ -0.31
PRPF39-204ENST00000553605 TRPC4Q9UBN4 977 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 ZC3H7BQ9UGR2 993 aaKnown RBP13.1□□□□□ -0.31
PRPF39-204ENST00000553605 HRH3Q9Y5N1 445 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 COL6A5A8TX70 2615 aa13.1□□□□□ -0.31
PRPF39-204ENST00000553605 LIN7AO14910 233 aaPredicted RBP13.09□□□□□ -0.31
PRPF39-204ENST00000553605 TPOP07202 933 aa13.09□□□□□ -0.31
PRPF39-204ENST00000553605 ITGALP20701 1170 aa13.09□□□□□ -0.31
PRPF39-204ENST00000553605 ST13P50502 369 aaKnown RBP13.09□□□□□ -0.31
PRPF39-204ENST00000553605 UBE2HP62256 183 aa13.09□□□□□ -0.31
PRPF39-204ENST00000553605 KLHL30Q0D2K2 578 aa13.09□□□□□ -0.31
PRPF39-204ENST00000553605 FASTKQ14296 549 aaKnown RBP13.09□□□□□ -0.31
PRPF39-204ENST00000553605 BRD3Q15059 726 aa13.09□□□□□ -0.31
PRPF39-204ENST00000553605 SF1Q15637 639 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms