RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 KIAA1211LQ6NV74 962 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 DOK6Q6PKX4 331 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 DLEU7Q6UYE1 221 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 FAM83HQ6ZRV2 1179 aaPredicted RBP25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 PDZD3Q86UT5 571 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 LRGUKQ96M69 825 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 TRPV5Q9NQA5 729 aa25.53■■□□□ 1.68
CCDC88C-205ENST00000553403 TRIM23P36406 574 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 DGKQP52824 942 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 CLNS1AP54105 237 aaKnown RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 IRF4Q15306 451 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 GOLM1Q8NBJ4 401 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 TP53I13Q8NBR0 393 aaPredicted RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 DNAJB14Q8TBM8 379 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 SLC13A3Q8WWT9 602 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 METTL2AQ96IZ6 378 aaKnown RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 ECSITQ9BQ95 431 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 SGPP1Q9BX95 441 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 C1QTNF2Q9BXJ5 285 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 KLHL4Q9C0H6 718 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 MBNL1Q9NR56 388 aaKnown RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 FBXL12Q9NXK8 326 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 PCYT1BQ9Y5K3 369 aaPredicted RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 UNC80Q8N2C7 3258 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 PLRG1O43660 514 aaKnown RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 DNTTP04053 509 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 AMD1P17707 334 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 OGFRL1Q5TC84 451 aaPredicted RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 NANOGP8Q6NSW7 305 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 IZUMO2Q6UXV1 221 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 SYTL1Q8IYJ3 562 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 KIAA2013Q8IYS2 634 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 LGR4Q9BXB1 951 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 WDR26Q9H7D7 661 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 NANOGQ9H9S0 305 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 SPATA6Q9NWH7 488 aaPredicted RBP25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 CIDEBQ9UHD4 219 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 LRCH1Q9Y2L9 728 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 PCDHGA11Q9Y5H2 935 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 MTCH2Q9Y6C9 303 aa25.52■■□□□ 1.68
CCDC88C-205ENST00000553403 AQP12BA6NM10 295 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 KMOO15229 486 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 DNAJA2O60884 412 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 EGFP01133 1207 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 FGL2Q14314 439 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 INPP5AQ14642 412 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 TRIP10Q15642 601 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 LCN8Q6JVE9 175 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 SLCO4C1Q6ZQN7 724 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 RALGPS2Q86X27 583 aaPredicted RBP25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 AQP12AQ8IXF9 295 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 IL17RCQ8NAC3 791 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 OR2T34Q8NGX1 318 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 GANCQ8TET4 914 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 WDR34Q96EX3 536 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 APIPQ96GX9 242 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 MKRN2Q9H000 416 aaKnown RBP25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 BRF2Q9HAW0 419 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 PHPT1Q9NRX4 125 aaPredicted RBP25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 SLAMF8Q9P0V8 285 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 ACTR3BQ9P1U1 418 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 THEGQ9P2T0 379 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 GMPR2Q9P2T1 348 aaKnown RBP25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 RIMS3Q9UJD0 308 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 DLGAP4Q9Y2H0 992 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 DYRK1BQ9Y463 629 aa25.51■■□□□ 1.67
CCDC88C-205ENST00000553403 PRUNE2Q8WUY3 3088 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 SLC7A1P30825 629 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 GSK3BP49841 420 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 TBPL1P62380 186 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 LIPEQ05469 1076 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 SGCGQ13326 291 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 LPCAT4Q643R3 524 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 PTRH1Q86Y79 214 aaKnown RBP25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 LRRC56Q8IYG6 542 aaPredicted RBP25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 CGREF1Q99674 301 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 ALG2Q9H553 416 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 C8orf33Q9H7E9 229 aaPredicted RBP25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 SLC23A2Q9UGH3 650 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 SCML1Q9UN30 329 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 PRKAB1Q9Y478 270 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 AP4S1Q9Y587 144 aa25.5■■□□□ 1.67
CCDC88C-205ENST00000553403 ADAM23O75077 832 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 KCNH1O95259 989 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 POU3F3P20264 500 aaPredicted RBP25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 KELP23276 732 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 PEX2P28328 305 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 YBX1P67809 324 aaKnown RBP25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 FAM174BQ3ZCQ3 159 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 RABL3Q5HYI8 236 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 C10orf62Q5T681 223 aaPredicted RBP25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 DNAJB8Q8NHS0 232 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 SETD7Q8WTS6 366 aaKnown RBP25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 RAD51AP1Q96B01 352 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 SGK2Q9HBY8 427 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 PRDM6Q9NQX0 595 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 VPS29Q9UBQ0 182 aa25.49■■□□□ 1.67
CCDC88C-205ENST00000553403 A0A1W2PQF6 199 aa25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 KLF8O95600 359 aaPredicted RBP25.48■■□□□ 1.67
CCDC88C-205ENST00000553403 PAK4O96013 591 aaPredicted RBP25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms