RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ZXDBP98169 803 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GRIK2Q13002 908 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TOP3AQ13472 1001 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TIGD6Q17RP2 521 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CTSL3PQ5NE16 218 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LINC00299Q6ZSB3 139 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 USP50Q70EL3 339 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LRRC8DQ7L1W4 858 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LSRQ86X29 649 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ADHFE1Q8IWW8 467 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GALNT12Q8IXK2 581 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RTL3Q8N8U3 475 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 OR8J3Q8NGG0 315 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 OR4L1Q8NH43 312 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SLC38A4Q969I6 547 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LINGO1Q96FE5 620 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CDKN2AIPNLQ96HQ2 116 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 KCNC2Q96PR1 638 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ASB2Q96Q27 587 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CITED4Q96RK1 184 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ITPAQ9BY32 194 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 DERL2Q9GZP9 239 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MOV10Q9HCE1 1003 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RAD18Q9NS91 495 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CATSPERZQ9NTU4 200 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ELOVL2Q9NXB9 296 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CD274Q9NZQ7 290 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 DOCK4Q8N1I0 1966 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TRBV5-3A0A0A0MS03 114 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LOC285095A0A1B0GVY8 99 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TYW5A2RUC4 315 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LCHNA4D1U4 455 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 FAM172BPA6NC97 362 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 KRT87PA6NCN2 255 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MYADML2A6NDP7 307 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CLDN24A6NM45 220 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 H0Y626 953 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 H3BM21 787 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CBX4O00257 560 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RFXAPO00287 272 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GFRA2O00451 464 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GPR182O15218 404 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 KLK8O60259 260 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RAMP2O60895 175 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 VPS4BO75351 444 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 DNAJB5O75953 348 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ALX3O95076 343 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LRATO95237 230 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TRIM16O95361 564 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PGRP06401 933 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 FHP07954 510 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 HSMCR30P0CW71 290 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 KCNE1P15382 129 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TNFRSF1BP20333 461 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PTPN6P29350 595 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 WEE1P30291 646 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 HOXC13P31276 330 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PIK3CBP42338 1070 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RGRP47804 291 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 NRIP1P48552 1158 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RENBPP51606 427 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CRYBA2P53672 197 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CHRNEQ04844 493 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 FADDQ13158 208 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GPR50Q13585 617 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TSTA3Q13630 321 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TAB1Q15750 504 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 FAM110CQ1W6H9 321 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PLEKHG6Q3KR16 790 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TBRG1Q3YBR2 411 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 CTXN3Q4LDR2 81 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RUNDC3AQ59EK9 446 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ZRANB3Q5FWF4 1079 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SLX4IPQ5VYV7 408 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PNCKQ6P2M8 343 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SHQ1Q6PI26 577 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TRAF7Q6Q0C0 670 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MBOAT1Q6ZNC8 495 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 ZNF438Q7Z4V0 828 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GOLGA7Q7Z5G4 137 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SNX20Q7Z614 316 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GLCCI1Q86VQ1 547 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PLPP6Q8IY26 295 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TMEM86AQ8N2M4 240 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 LIX1Q8N485 282 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RNF175Q8N4F7 328 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GLB1L3Q8NCI6 653 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 MDGA1Q8NFP4 955 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 IGSF8Q969P0 613 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 PYURFQ96I23 114 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 OR5M11Q96RB7 305 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 SYT17Q9BSW7 474 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 OR2B2Q9GZK3 357 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 IRF2BPLQ9H1B7 796 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 NSUN3Q9H649 340 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 RLIMQ9NVW2 624 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 GPRC5BQ9NZH0 403 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 NUFIP1Q9UHK0 495 aaKnown RBP4.73□□□□□ -1.65
LIMA1-214ENST00000552783 DLGAP4Q9Y2H0 992 aa4.73□□□□□ -1.65
LIMA1-214ENST00000552783 TPRKBQ9Y3C4 175 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms