RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MCATQ8IVS2 390 aaKnown RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 KBTBD2Q8IY47 623 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 DTWD1Q8N5C7 304 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 BRIX1Q8TDN6 353 aaKnown RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 PSMF1Q92530 271 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 C8orf44Q96CB5 159 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 MTFMTQ96DP5 389 aaKnown RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 VPS50Q96JG6 964 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 APOL2Q9BQE5 337 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 CRB3Q9BUF7 120 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 FSD1LQ9BXM9 530 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 PACSIN1Q9BY11 444 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 CUTCQ9NTM9 273 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 ABI3Q9P2A4 366 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 NXT1Q9UKK6 140 aaKnown RBP10.03□□□□□ -0.8
VPS29-208ENST00000550267 ASF1AQ9Y294 204 aa10.03□□□□□ -0.8
VPS29-208ENST00000550267 MDC1Q14676 2089 aaKnown RBP10.02□□□□□ -0.81
VPS29-208ENST00000550267 IGLV3-16A0A075B6K0 115 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 VSTM2BA6NLU5 285 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 MAP2K7O14733 419 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 RASAL1O95294 804 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 H2AFZP0C0S5 128 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 PRSS56P0CW18 603 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 ACPPP15309 386 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 ITGALP20701 1170 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 SMSP52788 366 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 TLE4Q04727 773 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 OLIG2Q13516 323 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 BRD3Q15059 726 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 C3AR1Q16581 482 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 MFSD7Q6UXD7 560 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 H2AFVQ71UI9 128 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 SNX20Q7Z614 316 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 CEP97Q8IW35 865 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 PRSS58Q8IYP2 241 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 TBC1D21Q8IYX1 336 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 CLDN19Q8N6F1 224 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 SIRT6Q8N6T7 355 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 LMNTD1Q8N9Z9 388 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 CCDC110Q8TBZ0 833 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 HEXDCQ8WVB3 486 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 CTNNBL1Q8WYA6 563 aaPredicted RBP10.02□□□□□ -0.81
VPS29-208ENST00000550267 SYN2Q92777 582 aaPredicted RBP10.02□□□□□ -0.81
VPS29-208ENST00000550267 HAS2Q92819 552 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 C14orf79Q96F83 325 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.02□□□□□ -0.81
VPS29-208ENST00000550267 VPS37BQ9H9H4 285 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 OR6C2Q9NZP2 312 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 RSPH14Q9UHP6 348 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 LCMT1Q9UIC8 334 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 MAU2Q9Y6X3 613 aa10.02□□□□□ -0.81
VPS29-208ENST00000550267 SETD2Q9BYW2 2564 aaPredicted RBP10.01□□□□□ -0.81
VPS29-208ENST00000550267 C5orf60A6NFR6 353 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 SLC19A2O60779 497 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 USP1O94782 785 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 MED26O95402 600 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 CLDN14O95500 239 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 CRYABP02511 175 aaKnown RBP10.01□□□□□ -0.81
VPS29-208ENST00000550267 UQCRHP07919 91 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 CELA2AP08217 269 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 PRR35P0CG20 571 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 ESRRAP11474 423 aaPredicted RBP10.01□□□□□ -0.81
VPS29-208ENST00000550267 TNNT1P13805 278 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 AGAP20933 346 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 ACRV1P26436 265 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 ACADLP28330 430 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 MC4RP32245 332 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 GRIA3P42263 894 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 NR2C2P49116 596 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 ZNF140P52738 457 aaPredicted RBP10.01□□□□□ -0.81
VPS29-208ENST00000550267 GEMP55040 296 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 CASP6P55212 293 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 RAC1P63000 192 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 PMP22Q01453 160 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 RBPJQ06330 500 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 KLC1Q07866 573 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 GRM7Q14831 915 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 KIR2DS3Q14952 304 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 NR1I3Q14994 352 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 ODF2Q5BJF6 829 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 KAZNQ674X7 775 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 FAAH2Q6GMR7 532 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 NAPRTQ6XQN6 538 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 ARHGEF18Q6ZSZ5 1173 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 NCCRP1Q6ZVX7 275 aaPredicted RBP10.01□□□□□ -0.81
VPS29-208ENST00000550267 BZW1Q7L1Q6 419 aaKnown RBP10.01□□□□□ -0.81
VPS29-208ENST00000550267 SERPINA9Q86WD7 417 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 KRTAP1-3Q8IUG1 177 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 DNAJB8Q8NHS0 232 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 STT3BQ8TCJ2 826 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 ADAMTS18Q8TE60 1221 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 DENND1AQ8TEH3 1009 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 CHTF18Q8WVB6 975 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 GORASP1Q9BQQ3 440 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 POLG2Q9UHN1 485 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 TINAGQ9UJW2 476 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 NEU2Q9Y3R4 380 aa10.01□□□□□ -0.81
VPS29-208ENST00000550267 NSG1A0A0A6YYJ2 146 aa10□□□□□ -0.81
VPS29-208ENST00000550267 CST8O60676 142 aa10□□□□□ -0.81
VPS29-208ENST00000550267 NADKO95544 446 aaPredicted RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms