RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 RNF187Q5TA31 235 aaPredicted RBP16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 LRRC8BQ6P9F7 803 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 GSTA5Q7RTV2 222 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 OVCH1Q7RTY7 1134 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 IQCKQ8N0W5 287 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 DTWD1Q8N5C7 304 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 OR2L3Q8NG85 312 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 MIPEPQ99797 713 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 SLC29A3Q9BZD2 475 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 SLC6A20Q9NP91 592 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 SPATA7Q9P0W8 599 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 FBXL4Q9UKA2 621 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 B3GNT3Q9Y2A9 372 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 MRFAP1Q9Y605 127 aa16.66■□□□□ 0.26
CHMP1A-205ENST00000548650 MDC1Q14676 2089 aaKnown RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 TARM1B6A8C7 271 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 SOCS6O14544 535 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 ALOX12BO75342 701 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 MED26O95402 600 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 CCDC175P0C221 793 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 CCNFP41002 786 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 ADARP55265 1226 aaKnown RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 CDK16Q00536 496 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 KCNJ11Q14654 390 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 PLEKHN1Q494U1 663 aaPredicted RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 KIAA0930Q6ICG6 404 aaPredicted RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 FRMPD2BQ6IN97 320 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 MRNIPQ6NTE8 343 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 TTC23LQ6PF05 361 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 RNF44Q7L0R7 432 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 METTL27Q8N6F8 245 aaPredicted RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 PRELID2Q8N945 189 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 TTC29Q8NA56 475 aaPredicted RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 OR2A1Q8NGT9 310 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 MAIP1Q8WWC4 291 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 INPP5DQ92835 1189 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 ZUFSPQ96AP4 578 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 NACC2Q96BF6 587 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 FAM136AQ96C01 138 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 SNRNP40Q96DI7 357 aaKnown RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 C19orf60Q96EN9 201 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 ZBTB20Q9HC78 741 aaPredicted RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 TSR3Q9UJK0 312 aaKnown RBP16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 CDC23Q9UJX2 597 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 HS3ST3B1Q9Y662 390 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 FAM169AQ9Y6X4 670 aa16.65■□□□□ 0.26
CHMP1A-205ENST00000548650 IPO13O94829 963 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 MATN4O95460 622 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 ESR1P03372 595 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 ERGP11308 486 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 PIM1P11309 404 aaPredicted RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 OGNP20774 298 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 VARSP26640 1264 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 FMO4P31512 558 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 MAGEA6P43360 314 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 VSX2P58304 361 aaPredicted RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 YBX1P67809 324 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 AIMP2Q13155 320 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 SHISA6Q6ZSJ9 500 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 RAB42Q8N4Z0 105 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 SSC4DQ8WTU2 575 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 FOPNLQ96NB1 174 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 TRIM56Q9BRZ2 755 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 LRRC4CQ9HCJ2 640 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 ATP13A2Q9NQ11 1180 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 MAP10Q9P2G4 905 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 NXT1Q9UKK6 140 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 CNTRLQ7Z7A1 2325 aa16.64■□□□□ 0.25
CHMP1A-205ENST00000548650 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 OR2A25A4D2G3 310 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 ARHGEF33A8MVX0 844 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 H3BMM5 538 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 CEP104O60308 925 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 KLHL41O60662 606 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 ITGA3P26006 1051 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 CXCR5P32302 372 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 OR1D4P47884 311 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 FASTKQ14296 549 aaKnown RBP16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 TRIP13Q15645 432 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 CRB2Q5IJ48 1285 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 PRAMEF13Q5VWM6 474 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 Q6ZS92 163 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 CENPUQ71F23 418 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 TRIM58Q8NG06 486 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 TM9SF4Q92544 642 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 TCF12Q99081 682 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 ILKAPQ9H0C8 392 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 SOX17Q9H6I2 414 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 ASF1BQ9NVP2 202 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 GALPQ9UBC7 116 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 PLEKHB1Q9UF11 243 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 CRYL1Q9Y2S2 319 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 PCDHGA10Q9Y5H3 936 aa16.63■□□□□ 0.25
CHMP1A-205ENST00000548650 LOC105369274A0A096LPK9 316 aa16.62■□□□□ 0.25
CHMP1A-205ENST00000548650 LOC102723532A0A0G2JNH3 316 aa16.62■□□□□ 0.25
CHMP1A-205ENST00000548650 A0A0J9YVX5 310 aa16.62■□□□□ 0.25
CHMP1A-205ENST00000548650 VSTM2BA6NLU5 285 aa16.62■□□□□ 0.25
CHMP1A-205ENST00000548650 MYO1CO00159 1063 aa16.62■□□□□ 0.25
CHMP1A-205ENST00000548650 SRPX2O60687 465 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms