RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RBM44	Q6ZP01	1051 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	ADCK2	Q7Z695	626 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	THOC6	Q86W42	341 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLC22A9	Q8IVM8	553 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	FAM20C	Q8IXL6	584 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	PDPR	Q8NCN5	879 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	OR56A3	Q8NH54	315 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	HMGCLL1	Q8TB92	370 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	MGARP	Q8TDB4	240 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	SREK1	Q8WXA9	508 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	HAUS8	Q9BT25	410 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	CD244	Q9BZW8	370 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	KLHL25	Q9H0H3	589 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	SSU72	Q9NP77	194 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	MRPS30	Q9NP92	439 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMEM9	Q9P0T7	183 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	OPTC	Q9UBM4	332 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	PTBP2	Q9UKA9	531 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLC22A14	Q9Y267	594 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	TNPO3	Q9Y5L0	923 aa	Known RBP	9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	KCNE2	Q9Y6J6	123 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	RALGAPA1	Q6GYQ0	2036 aa		9.81	□□□□□ -0.84
CPSF7-221	ENST00000543545	GOLGA4	Q13439	2230 aa	Known RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	ASCC3	Q8N3C0	2202 aa	Known RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMEM120B	A0PK00	339 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	WDR91	A4D1P6	747 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SLC9B1P1	A6NJY1	282 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545		A8MT66	165 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545		D6RAR5	112 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	NTN3	O00634	580 aa	Predicted RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	TM9SF1	O15321	606 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	PRPF4	O43172	522 aa	Known RBP eCLIP	9.8	□□□□□ -0.84	5e-6	■□□□□ 10.8
CPSF7-221	ENST00000543545	KIF1C	O43896	1103 aa	Known RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	KLK8	O60259	260 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	ZWINT	O95229	277 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SIX3	O95343	332 aa	Predicted RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	MT-CO3	P00414	261 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SBK3	P0C264	359 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	ERG	P11308	486 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	JUP	P14923	745 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	PSMB5	P28074	263 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	EEF1D	P29692	281 aa	Known RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	PEBP1	P30086	187 aa	Known RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	CSF2RB	P32927	897 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	ARL1	P40616	181 aa	Predicted RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SEPHS1	P49903	392 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	CLDN6	P56747	220 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	ABAT	P80404	500 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	INSM1	Q01101	510 aa	Predicted RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	CFHR1	Q03591	330 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SQSTM1	Q13501	440 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SETDB1	Q15047	1291 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	CFAP157	Q5JU67	520 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	C17orf64	Q86WR6	236 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	LRRC56	Q8IYG6	542 aa	Predicted RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMEM151A	Q8N4L1	468 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	TEX9	Q8N6V9	391 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCNYL1	Q8N7R7	359 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	OR4D9	Q8NGE8	314 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	PPP1R14C	Q8TAE6	165 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	RDH11	Q8TC12	318 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	ATP6V1E2	Q96A05	226 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	CCDC126	Q96EE4	140 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	PPM1M	Q96MI6	270 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMEM74	Q96NL1	305 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	OR2A14	Q96R47	310 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	CD180	Q99467	661 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	MAP3K3	Q99759	626 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMEM79	Q9BSE2	394 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SGPP1	Q9BX95	441 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	RAB33B	Q9H082	229 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SEMA6C	Q9H3T2	930 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	MLXIPL	Q9NP71	852 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	DNAJC11	Q9NVH1	559 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	INTS7	Q9NVH2	962 aa	Known RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	SOHLH2	Q9NX45	425 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	TOR4A	Q9NXH8	423 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	AKAP7	Q9P0M2	348 aa	Predicted RBP	9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	COPG2	Q9UBF2	871 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	EPHA6	Q9UF33	1036 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	POMT2	Q9UKY4	750 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	KLHL20	Q9Y2M5	609 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	FRYL	O94915	3013 aa		9.8	□□□□□ -0.84
CPSF7-221	ENST00000543545	ARID1B	Q8NFD5	2236 aa	Predicted RBP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	IGHV5-10-1	A0A0J9YXX1	117 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545		A0A0J9YY10	115 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545		A0A1W2PPV9	198 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	TLCD2	A6NGC4	264 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	LRRC14B	A6NHZ5	514 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	TARM1	B6A8C7	271 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545		G3V2L1	256 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	TMX2-CTNND1	H3BSU7	103 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	STX16-NPEPL1	H3BU86	382 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545		K7EPI3	171 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	STX16	O14662	325 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	CLGN	O14967	610 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	H2AFY	O75367	372 aa	Known RBP	9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	SUPT7L	O94864	414 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	PVR	P15151	417 aa		9.79	□□□□□ -0.84
CPSF7-221	ENST00000543545	EPB42	P16452	691 aa		9.79	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms