RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 CUEDC1Q9NWM3 386 aaPredicted RBP12.58□□□□□ -0.4
RTN3-212ENST00000543123 SYBUQ9NX95 663 aa12.58□□□□□ -0.4
RTN3-212ENST00000543123 UTP6Q9NYH9 597 aaKnown RBP12.58□□□□□ -0.4
RTN3-212ENST00000543123 CIDEBQ9UHD4 219 aa12.58□□□□□ -0.4
RTN3-212ENST00000543123 CDC23Q9UJX2 597 aa12.58□□□□□ -0.4
RTN3-212ENST00000543123 SOX13Q9UN79 622 aa12.58□□□□□ -0.4
RTN3-212ENST00000543123 FER1L5A0AVI2 2057 aa12.58□□□□□ -0.4
RTN3-212ENST00000543123 BLACEA4D250 179 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 FITM1A5D6W6 292 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 VPS26AO75436 327 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 UMODP07911 640 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 CHRM3P20309 590 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 CMPK1P30085 196 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 FMO4P31512 558 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 HSD17B2P37059 387 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 GRIA3P42263 894 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 BDKRB1P46663 353 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 ANKRD20A4Q4UJ75 823 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 CTSL3PQ5NE16 218 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 FCRL6Q6DN72 434 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 PRMT9Q6P2P2 845 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 Q8NA96 180 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 OR2L3Q8NG85 312 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 MFSD3Q96ES6 412 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 ZNF285Q96NJ3 590 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 BIRC8Q96P09 236 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 PSMG3-AS1Q96PY0 264 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 NAP1L3Q99457 506 aaPredicted RBP12.57□□□□□ -0.4
RTN3-212ENST00000543123 MIPEPQ99797 713 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 CCDC68Q9H2F9 335 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 XAB2Q9HCS7 855 aaKnown RBP12.57□□□□□ -0.4
RTN3-212ENST00000543123 SEMA3GQ9NS98 782 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 INTS10Q9NVR2 710 aaKnown RBP12.57□□□□□ -0.4
RTN3-212ENST00000543123 LUZP4Q9P127 313 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 FBXL4Q9UKA2 621 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 NFS1Q9Y697 457 aa12.57□□□□□ -0.4
RTN3-212ENST00000543123 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 MAGEB16A2A368 324 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 PRPF4O43172 522 aaKnown RBP eCLIP12.56□□□□□ -0.43e-8■□□□□ 10.6
RTN3-212ENST00000543123 PRICKLE3O43900 615 aaPredicted RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 CNOT3O75175 753 aaKnown RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 CCNDBP1O95273 360 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 MATN4O95460 622 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 CATP04040 527 aaKnown RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 MLNP12872 115 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 ITGA3P26006 1051 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 ARNTP27540 789 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 RPA3P35244 121 aaPredicted RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 MAGEA6P43360 314 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 KCNJ1P48048 391 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 CARSP49589 748 aaKnown RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 VSX2P58304 361 aaPredicted RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 OCA2Q04671 838 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 GPS1Q13098 491 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 KCNJ11Q14654 390 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 ARHGAP19Q14CB8 494 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 RBBP7Q16576 425 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 NKG7Q16617 165 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 PRAMEF13Q5VWM6 474 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 RNF44Q7L0R7 432 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 CILP2Q8IUL8 1156 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 SSC4DQ8WTU2 575 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 SMPDL3AQ92484 453 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 ZFYVE21Q9BQ24 234 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 SLC22A11Q9NSA0 550 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 CDC14AQ9UNH5 594 aa12.56□□□□□ -0.4
RTN3-212ENST00000543123 RUVBL2Q9Y230 463 aaKnown RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 UTP20O75691 2785 aaKnown RBP12.56□□□□□ -0.4
RTN3-212ENST00000543123 PCM1Q15154 2024 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 HYKKA2RU49 373 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 MYO1CO00159 1063 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 CTSVO60911 334 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 NIPSNAP2O75323 286 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 PKMP14618 531 aaKnown RBP12.55□□□□□ -0.4
RTN3-212ENST00000543123 MCM3P25205 808 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 PSMB5P28074 263 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 CXCR5P32302 372 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 VPS41P49754 854 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 EMP3P54852 163 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 THOC5Q13769 683 aaKnown RBP12.55□□□□□ -0.4
RTN3-212ENST00000543123 DHX34Q14147 1143 aaKnown RBP12.55□□□□□ -0.4
RTN3-212ENST00000543123 GBX1Q14549 363 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 MUM1Q2TAK8 710 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 TUBB8Q3ZCM7 444 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 WASHC2DQ5SRD0 308 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 AGAP7PQ5VUJ5 663 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 ZNF470Q6ECI4 717 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 NEPROQ6NW34 567 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 CES3Q6UWW8 571 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 NEK10Q6ZWH5 1172 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 LMNTD2Q8IXW0 634 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 PRELID2Q8N945 189 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 OR2A1Q8NGT9 310 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 OR9A1PQ8NGU1 263 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 AGAP4Q96P64 663 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 SPSB2Q99619 263 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 CRB3Q9BUF7 120 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 ZNF552Q9H707 407 aaPredicted RBP12.55□□□□□ -0.4
RTN3-212ENST00000543123 ZNF304Q9HCX3 659 aa12.55□□□□□ -0.4
RTN3-212ENST00000543123 SLC6A20Q9NP91 592 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms