RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 POMZP3Q6PJE2 187 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 RTL4Q6ZR62 310 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 FAM92BQ6ZTR7 304 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 IKBIPQ70UQ0 350 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CMC1Q7Z7K0 106 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 FAM160B2Q86V87 743 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 GLCCI1Q86VQ1 547 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 PAQR7Q86WK9 346 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 IL17RCQ8NAC3 791 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 GMCL1P1Q8NEA9 526 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 WDR36Q8NI36 951 aaKnown RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 FBXO30Q8TB52 745 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 BPIFB1Q8TDL5 484 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 FBLIM1Q8WUP2 373 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ISL2Q96A47 359 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 DPH7Q9BTV6 452 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 HTATIP2Q9BUP3 242 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 WDR18Q9BV38 432 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 TEKT3Q9BXF9 490 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 TRIM8Q9BZR9 551 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 BTBD1Q9H0C5 482 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CAB39LQ9H9S4 337 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 UFSP2Q9NUQ7 469 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CMTM6Q9NX76 183 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 GPN3Q9UHW5 284 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 FBXO10Q9UK96 956 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ADAM30Q9UKF2 790 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 LOC100130705A0A1B0GUX0 176 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 EFCAB10A6NFE3 127 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 C3orf70A6NLC5 250 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 C2orf74A8MZ97 194 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 USP17L10C9JJH3 530 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 SLCO1B7G3V0H7 640 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 TERTO14746 1132 aaKnown RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 AKAP8O43823 692 aaKnown RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 H2AFYO75367 372 aaKnown RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 APBB3O95704 486 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 SNHG28P0DPA3 235 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ITGAMP11215 1152 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 HOXD8P13378 290 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ACADLP28330 430 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ICAM3P32942 547 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 LIG4P49917 911 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 SMSP52788 366 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CDH13P55290 713 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 IL5RAQ01344 420 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CHAF1BQ13112 559 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 KYAT1Q16773 422 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 RFX4Q33E94 735 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 FAM76BQ5HYJ3 339 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 SPOUT1Q5T280 376 aaKnown RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 PDZK1Q5T2W1 519 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CYB5R2Q6BCY4 276 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 PLET1Q6UQ28 207 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CCDC149Q6ZUS6 474 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ABI1Q8IZP0 508 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CRYBG2Q8N1P7 616 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 MS4A15Q8N5U1 240 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 OR8D4Q8NGM9 314 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 SEMA4DQ92854 862 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CCDC126Q96EE4 140 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ITCHQ96J02 903 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 C10orf90Q96M02 699 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 RNF145Q96MT1 663 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 P2RY13Q9BPV8 354 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 RTP3Q9BQQ7 232 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 FAM213AQ9BRX8 229 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CLEC4MQ9H2X3 399 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 MRPL47Q9HD33 250 aaKnown RBP9.23□□□□□ -0.93
CLIP1-214ENST00000540539 ZFP64Q9NPA5 681 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 RGS18Q9NS28 235 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 AGTPBP1Q9UPW5 1226 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 CBY1Q9Y3M2 126 aa9.23□□□□□ -0.93
CLIP1-214ENST00000540539 TRAV19A0A0A6YYK7 116 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 F8VP50 259 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 CBX4O00257 560 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 TO15178 435 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 OGTO15294 1046 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 RGS10O43665 173 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 BRINP1O60477 761 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 PDE9AO76083 593 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 ATG12O94817 140 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 JUNDP17535 347 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 CAPN3P20807 821 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 GRIA4P48058 902 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 ALDH9A1P49189 494 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 VAMP7P51809 220 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 TKTL1P51854 596 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 GTF2BQ00403 316 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 POU4F1Q01851 419 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 RPL6Q02878 288 aaKnown RBP9.22□□□□□ -0.93
CLIP1-214ENST00000540539 ZNF543Q08ER8 600 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 IL18R1Q13478 541 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 CAPRIN1Q14444 709 aaKnown RBP9.22□□□□□ -0.93
CLIP1-214ENST00000540539 LIN9Q5TKA1 542 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 LRRC38Q5VT99 294 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 USP53Q70EK8 1073 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 MIB1Q86YT6 1006 aa9.22□□□□□ -0.93
CLIP1-214ENST00000540539 SLC22A9Q8IVM8 553 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms