RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 KHDC1Q4VXA5 237 aaKnown RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 CHSY3Q70JA7 882 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 RP9Q8TA86 221 aaKnown RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 MIEF2Q96C03 454 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 AP2M1Q96CW1 435 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 C19orf60Q96EN9 201 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 DUSP23Q9BVJ7 150 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 RIOK2Q9BVS4 552 aaKnown RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 TEX101Q9BY14 249 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 SEMA4BQ9NPR2 832 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 SLC7A8Q9UHI5 535 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 TSR3Q9UJK0 312 aaKnown RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 TMEM98Q9Y2Y6 226 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 DNAJC15Q9Y5T4 150 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ZFYVE26Q68DK2 2539 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 COL5A1P20908 1838 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 INPP4BO15327 924 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 CIB2O75838 187 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 CEACAM5P06731 702 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ANXA6P08133 673 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 JUPP14923 745 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 GPR1P46091 355 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 SPINT3P49223 89 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 RGS4P49798 205 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 BLKP51451 505 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 KIAA1024LP59773 190 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 INSM1Q01101 510 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 CYLC2Q14093 348 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 HERC3Q15034 1050 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 PPP1R3AQ16821 1122 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ACSBG2Q5FVE4 666 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ZDHHC20Q5W0Z9 365 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 KANK2Q63ZY3 851 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ZCCHC8Q6NZY4 707 aaKnown RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 DOK6Q6PKX4 331 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 SBSNQ6UWP8 590 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 FRA10AC1Q70Z53 315 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 NET1Q7Z628 596 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ADAMTSL2Q86TH1 951 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ENDOVQ8N8Q3 282 aaKnown RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 FAM181AQ8N9Y4 354 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ZNF483Q8TF39 744 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 UTP6Q9NYH9 597 aaKnown RBP11.62□□□□□ -0.55
CLIP1-208ENST00000537004 NUDT4Q9NZJ9 180 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 PCTPQ9UKL6 214 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 DOLKQ9UPQ8 538 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 ST14Q9Y5Y6 855 aa11.62□□□□□ -0.55
CLIP1-208ENST00000537004 SMG1Q96Q15 3661 aaKnown RBP11.61□□□□□ -0.55
CLIP1-208ENST00000537004 A0A1B0GTL3 188 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 ATP6AP2A0A1C7CYW4 349 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 PRSS38A1L453 326 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 H0Y3Z8 333 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 UBDO15205 165 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 ATP6AP2O75787 350 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 TNFP01375 233 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 MYCLP1P12525 358 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-208ENST00000537004 ZNF30P17039 623 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 NSG1P42857 185 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 FOXA1P55317 472 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 TARDBPQ13148 414 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLIP1-208ENST00000537004 CAMK2BQ13554 666 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 ELOCQ15369 112 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 GPRC6AQ5T6X5 926 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 LARP4Q71RC2 724 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLIP1-208ENST00000537004 DEFB107AQ8IZN7 70 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 GALNT15Q8N3T1 639 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 ZBTB2Q8N680 514 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 IFI44Q8TCB0 444 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 C3orf30Q96M34 536 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 KCNA7Q96RP8 456 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 COPS8Q99627 209 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 DCLRE1BQ9H816 532 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 CARS2Q9HA77 564 aaKnown RBP11.61□□□□□ -0.55
CLIP1-208ENST00000537004 MRGBPQ9NV56 204 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 ZDHHC3Q9NYG2 299 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 GULP1Q9UBP9 304 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 DGKBQ9Y6T7 804 aa11.61□□□□□ -0.55
CLIP1-208ENST00000537004 TRABD2BA6NFA1 517 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 AIM2O14862 343 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PROS1P07225 676 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 NUDT2P50583 147 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 DPTQ07507 201 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 ZRSR2Q15696 482 aaKnown RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 TRMT5Q32P41 509 aaKnown RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PERM1Q5SV97 790 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 C6orf132Q5T0Z8 1188 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 C6orf163Q5TEZ5 329 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 MYO1HQ8N1T3 1032 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 TWIST2Q8WVJ9 160 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 ESAMQ96AP7 390 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 ULK4Q96C45 1275 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PHPT1Q9NRX4 125 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 SPATS2LQ9NUQ6 558 aaKnown RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PKD2L2Q9NZM6 624 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PLEKHM1Q9Y4G2 1056 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 ASB1Q9Y576 335 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 PCYT1BQ9Y5K3 369 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-208ENST00000537004 RP1P56715 2156 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 IGLV3-16A0A075B6K0 115 aa11.6□□□□□ -0.55
CLIP1-208ENST00000537004 FADS2P1A8MWK0 482 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms