RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 TYSND1Q2T9J0 566 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 TTLL9Q3SXZ7 439 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 KIAA0930Q6ICG6 404 aaPredicted RBP12.58□□□□□ -0.4
RTN3-207ENST00000536011 CASC4Q6P4E1 433 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 CNSTQ6PJW8 725 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 IGFL3Q6UXB1 125 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 FAM20CQ8IXL6 584 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 ZADH2Q8N4Q0 377 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 RBMXL3Q8N7X1 1067 aaKnown RBP12.58□□□□□ -0.4
RTN3-207ENST00000536011 COG1Q8WTW3 980 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 LPGAT1Q92604 370 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 SLC26A1Q9H2B4 701 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 CUEDC1Q9NWM3 386 aaPredicted RBP12.58□□□□□ -0.4
RTN3-207ENST00000536011 SYBUQ9NX95 663 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 UTP6Q9NYH9 597 aaKnown RBP12.58□□□□□ -0.4
RTN3-207ENST00000536011 CIDEBQ9UHD4 219 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 CDC23Q9UJX2 597 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 SOX13Q9UN79 622 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 FER1L5A0AVI2 2057 aa12.58□□□□□ -0.4
RTN3-207ENST00000536011 BLACEA4D250 179 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 FITM1A5D6W6 292 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 VPS26AO75436 327 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 UMODP07911 640 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 CHRM3P20309 590 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 CMPK1P30085 196 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 FMO4P31512 558 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 HSD17B2P37059 387 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 GRIA3P42263 894 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 BDKRB1P46663 353 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 ANKRD20A4Q4UJ75 823 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 CTSL3PQ5NE16 218 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 FCRL6Q6DN72 434 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 PRMT9Q6P2P2 845 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 Q8NA96 180 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 OR2L3Q8NG85 312 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 MFSD3Q96ES6 412 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 ZNF285Q96NJ3 590 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 BIRC8Q96P09 236 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 PSMG3-AS1Q96PY0 264 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 NAP1L3Q99457 506 aaPredicted RBP12.57□□□□□ -0.4
RTN3-207ENST00000536011 MIPEPQ99797 713 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 CCDC68Q9H2F9 335 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 XAB2Q9HCS7 855 aaKnown RBP12.57□□□□□ -0.4
RTN3-207ENST00000536011 SEMA3GQ9NS98 782 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 INTS10Q9NVR2 710 aaKnown RBP12.57□□□□□ -0.4
RTN3-207ENST00000536011 LUZP4Q9P127 313 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 FBXL4Q9UKA2 621 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 NFS1Q9Y697 457 aa12.57□□□□□ -0.4
RTN3-207ENST00000536011 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 MAGEB16A2A368 324 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 PRPF4O43172 522 aaKnown RBP eCLIP12.56□□□□□ -0.43e-8■□□□□ 10.6
RTN3-207ENST00000536011 PRICKLE3O43900 615 aaPredicted RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 CNOT3O75175 753 aaKnown RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 CCNDBP1O95273 360 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 MATN4O95460 622 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 CATP04040 527 aaKnown RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 MLNP12872 115 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 ITGA3P26006 1051 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 ARNTP27540 789 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 RPA3P35244 121 aaPredicted RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 MAGEA6P43360 314 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 KCNJ1P48048 391 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 CARSP49589 748 aaKnown RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 VSX2P58304 361 aaPredicted RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 OCA2Q04671 838 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 GPS1Q13098 491 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 KCNJ11Q14654 390 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 ARHGAP19Q14CB8 494 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 RBBP7Q16576 425 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 NKG7Q16617 165 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 PRAMEF13Q5VWM6 474 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 RNF44Q7L0R7 432 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 CILP2Q8IUL8 1156 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 SSC4DQ8WTU2 575 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 SMPDL3AQ92484 453 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 ZFYVE21Q9BQ24 234 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 SLC22A11Q9NSA0 550 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 CDC14AQ9UNH5 594 aa12.56□□□□□ -0.4
RTN3-207ENST00000536011 RUVBL2Q9Y230 463 aaKnown RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 UTP20O75691 2785 aaKnown RBP12.56□□□□□ -0.4
RTN3-207ENST00000536011 PCM1Q15154 2024 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 HYKKA2RU49 373 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 MYO1CO00159 1063 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 CTSVO60911 334 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 NIPSNAP2O75323 286 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 PKMP14618 531 aaKnown RBP12.55□□□□□ -0.4
RTN3-207ENST00000536011 MCM3P25205 808 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 PSMB5P28074 263 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 CXCR5P32302 372 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 VPS41P49754 854 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 EMP3P54852 163 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 THOC5Q13769 683 aaKnown RBP12.55□□□□□ -0.4
RTN3-207ENST00000536011 DHX34Q14147 1143 aaKnown RBP12.55□□□□□ -0.4
RTN3-207ENST00000536011 GBX1Q14549 363 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 MUM1Q2TAK8 710 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 TUBB8Q3ZCM7 444 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 WASHC2DQ5SRD0 308 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 AGAP7PQ5VUJ5 663 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 ZNF470Q6ECI4 717 aa12.55□□□□□ -0.4
RTN3-207ENST00000536011 NEPROQ6NW34 567 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms