RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 DSTNP60981 165 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 TXNDC8Q6A555 127 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 FBXL22Q6P050 247 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 GKN2Q86XP6 184 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 CLIP4Q8N3C7 705 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 SLC35A5Q9BS91 424 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 KLRF1Q9NZS2 232 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 DNAJB9Q9UBS3 223 aa17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 RPL36Q9Y3U8 105 aaKnown RBP17.77■□□□□ 0.43
SFSWAP-203ENST00000535236 COQ9O75208 318 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ZNF3P17036 446 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ARHGAP40Q5TG30 622 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 TMEM214Q6NUQ4 689 aaKnown RBP17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ZNF676Q8N7Q3 588 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 OR2AP1Q8NGE2 309 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 CDK15Q96Q40 435 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 SP140LQ9H930 580 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 CENPMQ9NSP4 180 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ZNF639Q9UID6 485 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 A8MUI8 341 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 H3BNX3 289 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 SCDO00767 359 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 MTX2O75431 263 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ARRB1P49407 418 aaPredicted RBP17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 SPIN4Q56A73 249 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 PAQR3Q6TCH7 311 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 LRRC70Q7Z2Q7 622 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 CNDP2Q96KP4 475 aaKnown RBP17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 C12orf42Q96LP6 360 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 CCDC59Q9P031 241 aaKnown RBP17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 SQORQ9Y6N5 450 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 NOBOXO60393 691 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 SNX4O95219 450 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 VNN1O95497 513 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 SRPRAP08240 638 aaKnown RBP17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ATP1B2P14415 290 aaPredicted RBP17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 CSTF2P33240 577 aaKnown RBP eCLIP17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 CHRNA6Q15825 494 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 TAC3Q9UHF0 121 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 OR14I1A6ND48 311 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 SNTA1Q13424 505 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 CRB2Q5IJ48 1285 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 Q6ZVU0 165 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ZNF627Q7L945 461 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 LYSMD3Q7Z3D4 306 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 ZNF615Q8N8J6 731 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 COL21A1Q96P44 957 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 EPYCQ99645 322 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 OSBPL2Q9H1P3 480 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 MEMO1Q9Y316 297 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 PCDHGB1Q9Y5G3 927 aa17.76■□□□□ 0.43
SFSWAP-203ENST00000535236 HMGN1P05114 100 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 RPLP0P05388 317 aaKnown RBP17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CDKN1CP49918 316 aaPredicted RBP17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 PITRM1Q5JRX3 1037 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 GPR153Q6NV75 609 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 DNM1P34Q6PK57 102 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CEP97Q8IW35 865 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 SETD7Q8WTS6 366 aaKnown RBP17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CCDC115Q96NT0 180 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 B3GNT4Q9C0J1 378 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CCL5P13501 91 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 IMPDH1P20839 514 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CCSAPQ6IQ19 270 aaPredicted RBP17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 ZNF613Q6PF04 617 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 BPIFB1Q8TDL5 484 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 LMX1AQ8TE12 382 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 IRF9Q00978 393 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 IQCCQ4KMZ1 466 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 KLHL36Q8N4N3 616 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 COPS4Q9BT78 406 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 USP29Q9HBJ7 922 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 INPPL1O15357 1258 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CHRNA1P02708 482 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CYP17A1P05093 508 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CHRM5P08912 532 aaPredicted RBP17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 ANXA8P13928 327 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 MYLK3Q32MK0 819 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 SIRPB2Q5JXA9 342 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 CHRDL2Q6WN34 429 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 GAL3ST3Q96A11 431 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 TMEM109Q9BVC6 243 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 SLC32A1Q9H598 525 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 RC3H2Q9HBD1 1191 aaKnown RBP17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 TLR9Q9NR96 1032 aa17.75■□□□□ 0.43
SFSWAP-203ENST00000535236 PRH1P02810 166 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 HOXB2P14652 356 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 NR4A1P22736 598 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 ZNF366Q8N895 744 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 SMPDL3AQ92484 453 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 FKBP14Q9NWM8 211 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 CFAP20Q9Y6A4 193 aaKnown RBP17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 RLN2P04090 185 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 KLK1P06870 262 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 XKP51811 444 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 ROR2Q01974 943 aaKnown RBP17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 BNIP1Q12981 228 aa17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 KLF1Q13351 362 aaPredicted RBP17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 PRPF38BQ5VTL8 546 aaKnown RBP17.74■□□□□ 0.43
SFSWAP-203ENST00000535236 KIAA1161Q6NSJ0 714 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms