RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ATP1A2P50993 1020 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 PNLIPRP1P54315 467 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 CXADRP78310 365 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 PDAP1Q13442 181 aaKnown RBP12.48□□□□□ -0.41
VPS28-216ENST00000533806 PHKG1Q16816 387 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 MANEAQ5SRI9 462 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 FIGLAQ6QHK4 219 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 CCDC81Q6ZN84 652 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 GPR155Q7Z3F1 870 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 TAX1BP1Q86VP1 789 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 LRRN4CLQ8ND94 238 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 ANKRD49Q8WVL7 239 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 SMPDL3AQ92484 453 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 ANKRD7Q92527 254 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 CDKL2Q92772 493 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 RNF31Q96EP0 1072 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 LINGO1Q96FE5 620 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 GPR22Q99680 433 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 RBBP8Q99708 897 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 MIPEPQ99797 713 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 SERTAD3Q9UJW9 196 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 PCDHGA4Q9Y5G9 962 aa12.48□□□□□ -0.41
VPS28-216ENST00000533806 OR2A25A4D2G3 310 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 MAP3K7O43318 606 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 CTSVO60911 334 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 MT-ND3P03897 115 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 NTRK1P04629 796 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 STX2P32856 288 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 GP5P40197 560 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 CSRP3P50461 194 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 ITGA1P56199 1179 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 POU4F1Q01851 419 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 PRDX1Q06830 199 aaKnown RBP12.47□□□□□ -0.41
VPS28-216ENST00000533806 ZNF460Q14592 562 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 ZKSCAN8Q15776 578 aaPredicted RBP12.47□□□□□ -0.41
VPS28-216ENST00000533806 PPP1R3AQ16821 1122 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 GRTP1Q5TC63 336 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 ARHGAP40Q5TG30 622 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 ZNF385CQ66K41 422 aaPredicted RBP12.47□□□□□ -0.41
VPS28-216ENST00000533806 SUSD1Q6UWL2 747 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 SBSNQ6UWP8 590 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 MCATQ8IVS2 390 aaKnown RBP12.47□□□□□ -0.41
VPS28-216ENST00000533806 MYO1HQ8N1T3 1032 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 IL22RA1Q8N6P7 574 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 MCOLN3Q8TDD5 553 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 SLC45A3Q96JT2 553 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 CCDC138Q96M89 665 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 SPRTNQ9H040 489 aaPredicted RBP12.47□□□□□ -0.41
VPS28-216ENST00000533806 TSPYL1Q9H0U9 437 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 FANCEQ9HB96 536 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 SLC6A20Q9NP91 592 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 LHX9Q9NQ69 397 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 EURLQ9NYK6 297 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 NINJ2Q9NZG7 142 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 STOX2Q9P2F5 926 aaPredicted RBP12.47□□□□□ -0.41
VPS28-216ENST00000533806 IL17BQ9UHF5 180 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 PADI1Q9ULC6 663 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 NOVA2Q9UNW9 492 aaKnown RBP12.47□□□□□ -0.41
VPS28-216ENST00000533806 PLCL2Q9UPR0 1127 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 PCDHGA6Q9Y5G7 932 aa12.47□□□□□ -0.41
VPS28-216ENST00000533806 CFAP46Q8IYW2 2715 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 HMX2A2RU54 273 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 ZNF839A8K0R7 811 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 NRP2O60462 931 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 CPNE3O75131 537 aaKnown RBP12.46□□□□□ -0.41
VPS28-216ENST00000533806 FAM155BO75949 473 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 RELAQ04206 551 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 GPS2Q13227 327 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 NAB1Q13506 487 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 DEFB110Q30KQ9 67 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 CRTC2Q53ET0 693 aaPredicted RBP12.46□□□□□ -0.41
VPS28-216ENST00000533806 ZNF425Q6IV72 752 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 LCN10Q6JVE6 187 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 FBXO42Q6P3S6 717 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 PCSK4Q6UW60 755 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 MBOAT1Q6ZNC8 495 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 TMEM126BQ8IUX1 230 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 NKAPQ8N5F7 415 aaKnown RBP12.46□□□□□ -0.41
VPS28-216ENST00000533806 PPM1NQ8N819 430 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 PPFIBP2Q8ND30 876 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 IFT81Q8WYA0 676 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 UBXN10Q96LJ8 280 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 FMO2Q99518 471 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 DPH7Q9BTV6 452 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 SYNPO2LQ9H987 977 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 CAB39LQ9H9S4 337 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 PCMTD2Q9NV79 361 aa12.46□□□□□ -0.41
VPS28-216ENST00000533806 INTS7Q9NVH2 962 aaKnown RBP12.46□□□□□ -0.41
VPS28-216ENST00000533806 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.46□□□□□ -0.41
VPS28-216ENST00000533806 MTRF1LQ9UGC7 380 aaKnown RBP12.46□□□□□ -0.41
VPS28-216ENST00000533806 CACNA1GO43497 2377 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 FITM1A5D6W6 292 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 E7EQ34 232 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 MEN1O00255 615 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 CDC7O00311 574 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 ZNF749O43361 778 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 OR2B3O76000 313 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 SYF2O95926 243 aaKnown RBP12.45□□□□□ -0.42
VPS28-216ENST00000533806 CAPN1P07384 714 aa12.45□□□□□ -0.42
VPS28-216ENST00000533806 ENO2P09104 434 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms