RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 LMF1Q96S06 567 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 TSSK1BQ9BXA7 367 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 TRIM5Q9C035 493 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 ETNK1Q9HBU6 452 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 AMFRQ9UKV5 643 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 SLC39A10Q9ULF5 831 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 ENTPD4Q9Y227 616 aa22.53■■□□□ 1.2
CPSF1-202ENST00000527827 TARM1B6A8C7 271 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 SUN1O94901 812 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 FKBP9O95302 570 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 STSP08842 583 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 PRF1P14222 555 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 ADRA1DP25100 572 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 KLC1Q07866 573 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 FASTKD1Q53R41 847 aaKnown RBP22.52■■□□□ 1.2
CPSF1-202ENST00000527827 RPUSD3Q6P087 351 aaKnown RBP22.52■■□□□ 1.2
CPSF1-202ENST00000527827 LDB1Q86U70 411 aaPredicted RBP22.52■■□□□ 1.2
CPSF1-202ENST00000527827 MARVELD3Q96A59 401 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 VPS50Q96JG6 964 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 TRIM56Q9BRZ2 755 aaKnown RBP22.52■■□□□ 1.2
CPSF1-202ENST00000527827 CRB3Q9BUF7 120 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 KLK4Q9Y5K2 254 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 APCP25054 2843 aa22.52■■□□□ 1.2
CPSF1-202ENST00000527827 HYKKA2RU49 373 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 HNRNPRO43390 633 aaKnown RBP22.51■■□□□ 1.19
CPSF1-202ENST00000527827 NRP2O60462 931 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 SRPX2O60687 465 aaPredicted RBP22.51■■□□□ 1.19
CPSF1-202ENST00000527827 GAS8O95995 478 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 HPP00738 406 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 PSMB5P28074 263 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 SKOR2Q2VWA4 1001 aaPredicted RBP22.51■■□□□ 1.19
CPSF1-202ENST00000527827 CCSMST1Q4G0I0 132 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 FAM180AQ6UWF9 173 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 RAD9BQ6WBX8 426 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 NLRP9Q7RTR0 991 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 PEX26Q7Z412 305 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 UBL4BQ8N7F7 174 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 STT3BQ8TCJ2 826 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 PANX2Q96RD6 677 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 RAB11FIP5Q9BXF6 653 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 ZNF160Q9HCG1 818 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 ZNF304Q9HCX3 659 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 MARCH4Q9P2E8 410 aaPredicted RBP22.51■■□□□ 1.19
CPSF1-202ENST00000527827 NFS1Q9Y697 457 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 MYO7BQ6PIF6 2116 aa22.51■■□□□ 1.19
CPSF1-202ENST00000527827 LOC105369274A0A096LPK9 316 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 LOC102723532A0A0G2JNH3 316 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 ARHGAP10A1A4S6 786 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 KRT87PA6NCN2 255 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 ZGLP1P0C6A0 271 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 ACPPP15309 386 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 CARSP49589 748 aaKnown RBP22.5■■□□□ 1.19
CPSF1-202ENST00000527827 PRAMEP78395 509 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 ATG9BQ674R7 924 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 ZNF324BQ6AW86 544 aaPredicted RBP22.5■■□□□ 1.19
CPSF1-202ENST00000527827 PPP1R21Q6ZMI0 780 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 FJX1Q86VR8 437 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 PRSS58Q8IYP2 241 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 OR4N4Q8N0Y3 316 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 ACRBPQ8NEB7 543 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 ATG4AQ8WYN0 398 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 RAD51AP1Q96B01 352 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 MIEF2Q96C03 454 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 C8orf44Q96CB5 159 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 MIPEPQ99797 713 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 OLAHQ9NV23 265 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 TCAF1Q9Y4C2 921 aa22.5■■□□□ 1.19
CPSF1-202ENST00000527827 A0A0J9YVX5 310 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 PRMT5O14744 637 aaPredicted RBP22.49■■□□□ 1.19
CPSF1-202ENST00000527827 C1orf105O95561 183 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 PPARGP37231 505 aaPredicted RBP22.49■■□□□ 1.19
CPSF1-202ENST00000527827 BDKRB1P46663 353 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 TMED2Q15363 201 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 SP5Q6BEB4 398 aaPredicted RBP22.49■■□□□ 1.19
CPSF1-202ENST00000527827 BCORP1Q8N888 145 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 OR2L3Q8NG85 312 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 OR1N1Q8NGS0 311 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 HMGCLL1Q8TB92 370 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 PSMF1Q92530 271 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 STOX2Q9P2F5 926 aaPredicted RBP22.49■■□□□ 1.19
CPSF1-202ENST00000527827 ZNF282Q9UDV7 671 aaPredicted RBP22.49■■□□□ 1.19
CPSF1-202ENST00000527827 ZC3H7BQ9UGR2 993 aaKnown RBP22.49■■□□□ 1.19
CPSF1-202ENST00000527827 C3orf18Q9UK00 162 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 FAM169AQ9Y6X4 670 aa22.49■■□□□ 1.19
CPSF1-202ENST00000527827 A0A1B0GUH1 482 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 A0A1W2PPV9 198 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 MIF4GDA9UHW6 222 aaKnown RBP22.48■■□□□ 1.19
CPSF1-202ENST00000527827 MAP2K7O14733 419 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 JRKO75564 520 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 IPO7O95373 1038 aaKnown RBP22.48■■□□□ 1.19
CPSF1-202ENST00000527827 STIP1P31948 543 aaKnown RBP22.48■■□□□ 1.19
CPSF1-202ENST00000527827 FDFT1P37268 417 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 TDGF1P3P51864 188 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 OCA2Q04671 838 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 OASLQ15646 514 aaKnown RBP22.48■■□□□ 1.19
CPSF1-202ENST00000527827 PRMT9Q6P2P2 845 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 TTC23LQ6PF05 361 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 RNF44Q7L0R7 432 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 LAPTM4BQ86VI4 370 aa22.48■■□□□ 1.19
CPSF1-202ENST00000527827 OR2A1Q8NGT9 310 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms