RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 ACSBG2Q5FVE4 666 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 WASHC2DQ5SRD0 308 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 MRPL14Q6P1L8 145 aaKnown RBP13.1□□□□□ -0.31
TCOF1-215ENST00000515516 CENPUQ71F23 418 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 OVCH1Q7RTY7 1134 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 PPIL6Q8IXY8 311 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 SLC35F6Q8N357 371 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 OR2L3Q8NG85 312 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 CPT1CQ8TCG5 803 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 SMPDL3AQ92484 453 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 MIB2Q96AX9 1013 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 FKBP10Q96AY3 582 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 VPS50Q96JG6 964 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 NUDT9Q9BW91 350 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 SLAMF7Q9NQ25 335 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 FBXO6Q9NRD1 293 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-215ENST00000515516 KLHL42Q9P2K6 505 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 COMMD10Q9Y6G5 202 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 BOD1L1Q8NFC6 3051 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 A0A0J9YVX5 310 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 HYKKA2RU49 373 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 VPS26AO75436 327 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 PSIP1O75475 530 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 SYF2O95926 243 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 EIF2S1P05198 315 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 ITGAXP20702 1163 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 MCM3P25205 808 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 VARSP26640 1264 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 PSMB5P28074 263 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 CTBP1Q13363 440 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 RAPSNQ13702 412 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 UBAP2LQ14157 1087 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 GBX1Q14549 363 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 NADK2Q4G0N4 442 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 DCAF10Q5QP82 559 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 VWA5B1Q5TIE3 1220 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 NEK10Q6ZWH5 1172 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 PCGF5Q86SE9 256 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 DENND6AQ8IWF6 608 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 OR2A1Q8NGT9 310 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 COG1Q8WTW3 980 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 KCNJ9Q92806 393 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 INPP5DQ92835 1189 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 COL26A1Q96A83 441 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 NACC2Q96BF6 587 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 SMAD5Q99717 465 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 TRIM56Q9BRZ2 755 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 FAM167BQ9BTA0 163 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 ACAT2Q9BWD1 397 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 MFRPQ9BY79 579 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 GRPEL1Q9HAV7 217 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 MRPS30Q9NP92 439 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 ATP13A2Q9NQ11 1180 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 P4HTMQ9NXG6 502 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 C5AR2Q9P296 337 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 MAP10Q9P2G4 905 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 GALPQ9UBC7 116 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 ZC3H7BQ9UGR2 993 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 ASIC3Q9UHC3 531 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 CDC23Q9UJX2 597 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 NXT1Q9UKK6 140 aaKnown RBP13.09□□□□□ -0.31
TCOF1-215ENST00000515516 NEU2Q9Y3R4 380 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 KLK4Q9Y5K2 254 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 TENM4Q6N022 2769 aa13.09□□□□□ -0.31
TCOF1-215ENST00000515516 BSNQ9UPA5 3926 aa13.08□□□□□ -0.31
TCOF1-215ENST00000515516 ZCWPW2A0A1B0GU75 182 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 FITM1A5D6W6 292 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 KRT87PA6NCN2 255 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 ARHGEF33A8MVX0 844 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 MYO1CO00159 1063 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 CES2O00748 559 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 ZBTB14O43829 449 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 CTSVO60911 334 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 IPO13O94829 963 aaKnown RBP13.08□□□□□ -0.32
TCOF1-215ENST00000515516 MPC1LP0DKB6 136 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 ENO3P13929 434 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-215ENST00000515516 SLC1A2P43004 574 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 CD97P48960 835 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 CLCN7P51798 805 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 PNLIPRP1P54315 467 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 PTK6Q13882 451 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 FASTKQ14296 549 aaKnown RBP13.08□□□□□ -0.32
TCOF1-215ENST00000515516 IRAK1BP1Q5VVH5 260 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 UGT3A1Q6NUS8 523 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 JMJD6Q6NYC1 403 aaPredicted RBP13.08□□□□□ -0.32
TCOF1-215ENST00000515516 PRMT9Q6P2P2 845 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 SUSD1Q6UWL2 747 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 REXO1L1PQ8IX06 675 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 GALNT16Q8N428 558 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 NAT8LQ8N9F0 302 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.08□□□□□ -0.32
TCOF1-215ENST00000515516 TM9SF4Q92544 642 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 ANP32BQ92688 251 aaKnown RBP13.08□□□□□ -0.32
TCOF1-215ENST00000515516 ZNF285Q96NJ3 590 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 PKP4Q99569 1192 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 ZFYVE21Q9BQ24 234 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 DPH7Q9BTV6 452 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 WDR54Q9H977 334 aa13.08□□□□□ -0.32
TCOF1-215ENST00000515516 TRMT1Q9NXH9 659 aaKnown RBP13.08□□□□□ -0.32
TCOF1-215ENST00000515516 ANKMY1Q9P2S6 941 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms