RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TSPAN33Q86UF1 283 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 CALHM3Q86XJ0 350 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 WFDC5Q8TCV5 224 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 PIH1D2Q8WWB5 315 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 MYO19Q96H55 970 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 PANX1Q96RD7 426 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 TNKS2Q9H2K2 1166 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 DUSP21Q9H596 190 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 COL6A1P12109 1028 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 CD36P16671 472 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SDC1P18827 310 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ITPKAP23677 461 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SEPHS1P49903 392 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 CLDN8P56748 225 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ABHD18Q0P651 414 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 GPRC6AQ5T6X5 926 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 PDE12Q6L8Q7 609 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 RFLNAQ6ZTI6 216 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC22A16Q86VW1 577 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 HORMAD1Q86X24 394 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 PLD3Q8IV08 490 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SETD9Q8NE22 299 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 HTRA1Q92743 480 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ATG10Q9H0Y0 220 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 NMRK2Q9NPI5 230 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 KIF17Q9P2E2 1029 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 DNMT3BQ9UBC3 853 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 NAALAD2Q9Y3Q0 740 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 A0A096LPI6 279 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 A8MU76 341 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC22A1O15245 554 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 RGS10O43665 173 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ANXA5P08758 320 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ELNP15502 786 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 BPIP17213 487 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ENGP17813 658 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 CLK1P49759 484 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 CASP9P55211 416 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ZXDCQ2QGD7 858 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SHQ1Q6PI26 577 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ANKS3Q6ZW76 656 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 MFSD4AQ8N468 514 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SPATA17Q96L03 361 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 RMND5AQ9H871 391 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 MARCH5Q9NX47 278 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 GIN1Q9NXP7 522 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 FAM220BPB1ANY3 271 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CLIC1O00299 241 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 AQP9O43315 295 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CNOT3O75175 753 aaKnown RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 NTRK1P04629 796 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 EPORP19235 508 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CSKP41240 450 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 ACOX1Q15067 660 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CST9Q5W186 159 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 GPR153Q6NV75 609 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 UTS2BQ765I0 119 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 SNX20Q7Z614 316 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 ZNF641Q96N77 438 aaPredicted RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 NTMT1Q9BV86 223 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 REXO4Q9GZR2 422 aaKnown RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 KRT84Q9NSB2 600 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 SIRT5Q9NXA8 310 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 ERVK-11Q9UQG0 969 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 GLYATL1P3A0A0U1RQE8 302 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 FZD6O60353 706 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 WDR47O94967 919 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 PGLSO95336 258 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 VIPP01282 170 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 PTPN6P29350 595 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 HNF1BP35680 557 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CRHR2Q13324 411 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 LRRC73Q5JTD7 316 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CLECL1Q8IZS7 167 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 OR6Q1Q8NGQ2 317 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 USP7Q93009 1102 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 REXO5Q96IC2 774 aaKnown RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 DACH2Q96NX9 599 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 MAGIXQ9H6Y5 334 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 MAGEE1Q9HCI5 957 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 ACOT13Q9NPJ3 140 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 THG1LQ9NWX6 298 aaKnown RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 MBD1Q9UIS9 605 aaPredicted RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 HTTP42858 3142 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 C21orf33P30042 268 aaPredicted RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 KDELR2P33947 212 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 SERPINB10P48595 397 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 FKBP1BP68106 108 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 RPP38P78345 283 aaKnown RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 PLD1Q13393 1074 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 HIST2H2ACQ16777 129 aaPredicted RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 PTCHD3Q3KNS1 767 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 CCDC71Q8IV32 467 aaPredicted RBP9□□□□□ -0.97
LIMCH1-215ENST00000512632 PLPP6Q8IY26 295 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 APCDD1Q8J025 514 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 FBXO22Q8NEZ5 403 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 MCFD2Q8NI22 146 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 DYNC2LI1Q8TCX1 351 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 S100ZQ8WXG8 99 aa9□□□□□ -0.97
LIMCH1-215ENST00000512632 ZHX1-C8orf76Q96EF9 292 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms