RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TMBIM4Q9HC24 238 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 ZNF446Q9NWS9 450 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 PDP2Q9P2J9 529 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 TAC3Q9UHF0 121 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 CSO75390 466 aaKnown RBP28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 CREB1P16220 341 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 INHBCP55103 352 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 ZFP36L1Q07352 338 aaKnown RBP28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 PRAMEF13Q5VWM6 474 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 PRSS42Q7Z5A4 293 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 FAM20CQ8IXL6 584 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 DCBLD1Q8N8Z6 715 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 TMEM74Q96NL1 305 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 SGPP1Q9BX95 441 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 PITPNM3Q9BZ71 974 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 IQCGQ9H095 443 aaKnown RBP28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 PCDHB11Q9Y5F2 797 aa28.58■■■□□ 2.17
LIMCH1-211ENST00000509638 A8MU76 341 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 SPAG7O75391 227 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 SBK3P0C264 359 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 CDH3P22223 829 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 CCND1P24385 295 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 SF1Q15637 639 aaKnown RBP28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 PFKFB4Q16877 469 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 SLC5A12Q1EHB4 618 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 ISXQ2M1V0 245 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 PTCHD3Q3KNS1 767 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 CACHD1Q5VU97 1274 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 CAPN13Q6MZZ7 669 aaPredicted RBP28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 RAB44Q7Z6P3 723 aaPredicted RBP28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 EXOC3L1Q86VI1 746 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 FBXO39Q8N4B4 442 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 TMEM151AQ8N4L1 468 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 OR2A1Q8NGT9 310 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 MIPEPQ99797 713 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 C12orf65Q9H3J6 166 aaKnown RBP28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 GRID1Q9ULK0 1009 aa28.57■■■□□ 2.16
LIMCH1-211ENST00000509638 CACNA1AO00555 2505 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 HEATR5BQ9P2D3 2071 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 KNTC1P50748 2209 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 MAP2K7O14733 419 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 TAPBPO15533 448 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 CCKBRP32239 447 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 LSSP48449 732 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 TMPRSS12Q86WS5 348 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 OR2L3Q8NG85 312 aa28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 PTBP2Q9UKA9 531 aaKnown RBP28.56■■■□□ 2.16
LIMCH1-211ENST00000509638 IGHV5-51A0A0C4DH38 117 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 A0A0J9YY10 115 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 TARM1B6A8C7 271 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 SMIM24O75264 130 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 IPO13O94829 963 aaKnown RBP28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 PVRP15151 417 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 SLC6A12P48065 614 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 HSPA7P48741 367 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 DGLUCYQ7Z3D6 616 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 CHCHD4Q8N4Q1 142 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 KLHL25Q9H0H3 589 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 CNOT10Q9H9A5 744 aaKnown RBP28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 C1GALT1Q9NS00 363 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 WDFY3Q8IZQ1 3526 aa28.55■■■□□ 2.16
LIMCH1-211ENST00000509638 FAM149AA5PLN7 773 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 TOX3O15405 576 aaPredicted RBP28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 KLK8O60259 260 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 PROCP04070 461 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ANKRD34CP0C6C1 535 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 AGTR2P50052 363 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ALDH18A1P54886 795 aaKnown RBP28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 TRA2AQ13595 282 aaKnown RBP eCLIP28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 CCDC153Q494R4 210 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ICE2Q659A1 982 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 CARFQ8N187 725 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 GALNT15Q8N3T1 639 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 UBTD2Q8WUN7 234 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ESAMQ96AP7 390 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 INTS7Q9NVH2 962 aaKnown RBP28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ASB1Q9Y576 335 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ACTL7BQ9Y614 415 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 AGRPO00253 132 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 PLIN3O60664 434 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 WDR47O94967 919 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 JUPP14923 745 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ST6GAL1P15907 406 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 GGT5P36269 586 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 GDF5P43026 501 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 SEPHS1P49903 392 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 YBX1P67809 324 aaKnown RBP28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 SETDB1Q15047 1291 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ARHGAP22Q7Z5H3 698 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 PTGR2Q8N8N7 351 aaPredicted RBP28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 PCBD2Q9H0N5 130 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 ZNF768Q9H5H4 540 aaKnown RBP28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 TMCO1Q9UM00 188 aa28.54■■■□□ 2.16
LIMCH1-211ENST00000509638 TYROBPO43914 113 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 MAGP20916 626 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 C16orf72Q14CZ0 275 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 KIAA1614Q5VZ46 1190 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 PHF21BQ96EK2 531 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 OR4K3Q96R72 315 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 SEMA5BQ9P283 1151 aa28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms