RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 CLEC3BP05452 202 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 VPREB1P12018 145 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 PON1P27169 355 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 TUBP50607 506 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 TAF10Q12962 218 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 RUNX3Q13761 415 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 TBCEQ15813 527 aaPredicted RBP2.07□□□□□ -2.08
NUP54-208ENST00000508604 UGT3A1Q6NUS8 523 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 NHLRC1Q6VVB1 395 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 TICAM2Q86XR7 235 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 C11orf42Q8N5U0 333 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 OR2AJ1Q8NGZ0 328 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 NSMAFQ92636 917 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 EVI5LQ96CN4 794 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 CEP295NLQ96MC4 621 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 POLR3GLQ9BT43 218 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 LCE3DQ9BYE3 92 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 WNT5BQ9H1J7 359 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 JMJD4Q9H9V9 463 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 TRPV4Q9HBA0 871 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 GKN1Q9NS71 199 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 THAP10Q9P2Z0 257 aaPredicted RBP2.07□□□□□ -2.08
NUP54-208ENST00000508604 NME7Q9Y5B8 376 aa2.07□□□□□ -2.08
NUP54-208ENST00000508604 ARID4BQ4LE39 1312 aaPredicted RBP2.07□□□□□ -2.08
NUP54-208ENST00000508604 TEX28O15482 410 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 EIF3JO75822 258 aaKnown RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 TPPPO94811 219 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 KRT6AP02538 564 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 KRT6BP04259 564 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 PRLRP16471 622 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 ZNF19P17023 458 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 PSMA4P25789 261 aaKnown RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 RGS2P41220 211 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 SOX3P41225 446 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 KRT6CP48668 564 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 SLC9A3P48764 834 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 PPM1FP49593 454 aaPredicted RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 CCR9P51686 369 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 CASP6P55212 293 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 PPIAP62937 165 aaKnown RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 CDK3Q00526 305 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 SGCGQ13326 291 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 ASTE1Q2TB18 679 aaPredicted RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 ATAD3CQ5T2N8 411 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 TMCO3Q6UWJ1 677 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 OR10G7Q8NGN6 311 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 PSMD1Q99460 953 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 SLC39A8Q9C0K1 460 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 SAGE1Q9NXZ1 904 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 TRIM17Q9Y577 477 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 SELENOKQ9Y6D0 94 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 LIPT2A6NK58 231 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 MED24O75448 989 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 PPARGP37231 505 aaPredicted RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 MYL7Q01449 175 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 C2orf83Q53S99 150 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 HERC4Q5GLZ8 1057 aaPredicted RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 LEKR1Q6ZMV7 388 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 TMPRSS11FQ6ZWK6 438 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 RTL3Q8N8U3 475 aaKnown RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 SLC37A3Q8NCC5 494 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 PHYHIPLQ96FC7 376 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 RBM24Q9BX46 236 aaKnown RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 MYH16Q9H6N6 1097 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 ADAM22Q9P0K1 906 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 LUZP4Q9P127 313 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 NAALAD2Q9Y3Q0 740 aa2.06□□□□□ -2.08
NUP54-208ENST00000508604 LRRFIP2Q9Y608 721 aaKnown RBP2.06□□□□□ -2.08
NUP54-208ENST00000508604 ZNF541Q9H0D2 1346 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 K7EQD1 137 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 TRAFD1O14545 582 aaPredicted RBP2.05□□□□□ -2.08
NUP54-208ENST00000508604 PRAMEF11O60813 436 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 C9P02748 559 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 PYGLP06737 847 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 DEKP35659 375 aaKnown RBP2.05□□□□□ -2.08
NUP54-208ENST00000508604 HNRNPA3P51991 378 aaKnown RBP2.05□□□□□ -2.08
NUP54-208ENST00000508604 SETQ01105 290 aaPredicted RBP2.05□□□□□ -2.08
NUP54-208ENST00000508604 ZNF79Q15937 498 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 TMEM95Q3KNT9 176 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 SPECC1Q5M775 1068 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 SPDYCQ5MJ68 293 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 GORABQ5T7V8 394 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 KLHL35Q6PF15 583 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 C3P1Q6ZMU1 363 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 BADQ92934 168 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 PGAM5Q96HS1 289 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 NEK1Q96PY6 1258 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 TEX13BQ9BXU2 312 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 TMX4Q9H1E5 349 aaPredicted RBP2.05□□□□□ -2.08
NUP54-208ENST00000508604 PNNQ9H307 717 aaKnown RBP2.05□□□□□ -2.08
NUP54-208ENST00000508604 ZNF581Q9P0T4 197 aa2.05□□□□□ -2.08
NUP54-208ENST00000508604 LARSQ9P2J5 1176 aaKnown RBP2.05□□□□□ -2.08
NUP54-208ENST00000508604 A0A0U1RQG5 324 aaPredicted RBP2.04□□□□□ -2.08
NUP54-208ENST00000508604 LRRC72A6NJI9 287 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 A6NLC8 198 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 HEPACAM2A8MVW5 462 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 MYO1GB0I1T2 1018 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 SNURFLB1AK76 121 aa2.04□□□□□ -2.08
NUP54-208ENST00000508604 CDX4O14627 284 aaPredicted RBP2.04□□□□□ -2.08
NUP54-208ENST00000508604 ERAL1O75616 437 aaKnown RBP2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms