RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 DEFB115Q30KQ5 88 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 CARD16Q5EG05 197 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 KLHL35Q6PF15 583 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 DOK6Q6PKX4 331 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 CYP2U1Q7Z449 544 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 ADHFE1Q8IWW8 467 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 EID3Q8N140 333 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 TERB1Q8NA31 727 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 ZNF555Q8NEP9 628 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 OR5K1Q8NHB7 308 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 ZNF296Q8WUU4 475 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-204ENST00000501271 SNX19Q92543 992 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 HDAC2Q92769 488 aaKnown RBP9.58□□□□□ -0.88
CLIP1-204ENST00000501271 SCAMP4Q969E2 229 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 PYURFQ96I23 114 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 REXO5Q96IC2 774 aaKnown RBP9.58□□□□□ -0.88
CLIP1-204ENST00000501271 BBS2Q9BXC9 721 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 CPEB1Q9BZB8 566 aaKnown RBP9.58□□□□□ -0.88
CLIP1-204ENST00000501271 LHPPQ9H008 270 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 EXD2Q9NVH0 621 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 DNAJC11Q9NVH1 559 aa9.58□□□□□ -0.88
CLIP1-204ENST00000501271 TMEFF2Q9UIK5 374 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-204ENST00000501271 UPK3BL1B0FP48 263 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 UPK3BL2E5RIL1 263 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 RFXANKO14593 260 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 SGTAO43765 313 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 E2F6O75461 281 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 LRG1P02750 347 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 CD22P20273 847 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 HALP42357 657 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 PFN3P60673 137 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 PIGFQ07326 219 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 CHIT1Q13231 466 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 SP140Q13342 867 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 SPIDRQ14159 915 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 C6orf141Q5SZD1 244 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 ZNF648Q5T619 568 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 FRG2Q64ET8 278 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 NOXRED1Q6NXP6 359 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 FKBP9P1Q75LS8 142 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 TMEM25Q86YD3 366 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 SPARTQ8N0X7 666 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 OR7A2PQ8NGA2 310 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 TBC1D15Q8TC07 691 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 TANKQ92844 425 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 CNDP2Q96KP4 475 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 FRG2BQ96QU4 278 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 BARD1Q99728 777 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 PAK6Q9NQU5 681 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 THG1LQ9NWX6 298 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 TMEM9Q9P0T7 183 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 FAM8A1Q9UBU6 413 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 CIDEBQ9UHD4 219 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 SLC25A13Q9UJS0 675 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 FBXO10Q9UK96 956 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 FAF1Q9UNN5 650 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 TMED5Q9Y3A6 229 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 PTPRSQ13332 1948 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 LOC100130705A0A1B0GUX0 176 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 PABPN1LA6NDY0 278 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 TMEM202A6NGA9 273 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 NPIPB8E9PQR5 432 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 GRM6O15303 877 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 RECQL5O94762 991 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 POP4O95707 220 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 IL1RNP18510 177 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 CYP2A7P20853 494 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 MAPK1P28482 360 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 CCR2P41597 374 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 MAGEA2P43356 314 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 KIR3DL1P43629 444 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 ISL1P61371 349 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 NFATC3Q12968 1075 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 MYBPC3Q14896 1274 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 LAPTM4AQ15012 233 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 SKIV2LQ15477 1246 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 PLEKHS1Q5SXH7 462 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 GTF2IRD2BQ6EKJ0 949 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 SLC39A5Q6ZMH5 540 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 HSD11B1LQ7Z5J1 315 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 GALNT10Q86SR1 603 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 GTF2IRD2Q86UP8 949 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 DCP2Q8IU60 420 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 REM2Q8IYK8 340 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 BPIFB6Q8NFQ5 453 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 ELMO1Q92556 727 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 NELL1Q92832 810 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 THAP11Q96EK4 314 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 ZNF641Q96N77 438 aaPredicted RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 CORO1BQ9BR76 489 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 REXO4Q9GZR2 422 aaKnown RBP9.57□□□□□ -0.88
CLIP1-204ENST00000501271 PLGRKTQ9HBL7 147 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 C3orf18Q9UK00 162 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 ABCG2Q9UNQ0 655 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 ERVK-11Q9UQG0 969 aa9.57□□□□□ -0.88
CLIP1-204ENST00000501271 OR2AG2A6NM03 316 aa9.56□□□□□ -0.88
CLIP1-204ENST00000501271 NEDD8-MDP1E9PL57 170 aa9.56□□□□□ -0.88
CLIP1-204ENST00000501271 MAGEB3O15480 346 aa9.56□□□□□ -0.88
CLIP1-204ENST00000501271 MITFO75030 526 aaPredicted RBP9.56□□□□□ -0.88
CLIP1-204ENST00000501271 ZNF682O95780 498 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms