RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ADHFE1Q8IWW8 467 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZNF461Q8TAF7 563 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HERVK_113Q902F9 699 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PAK1IP1Q9NWT1 392 aaPredicted RBP15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 VNN3Q9NY84 501 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FBXO10Q9UK96 956 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NAALAD2Q9Y3Q0 740 aa15.67■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KCNE1BA0A087WTH5 132 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HS6ST1O60243 411 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GSNP06396 782 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CA3P07451 260 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TACR1P25103 407 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SPAM1P38567 509 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CDKN2CP42773 168 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SEMG2Q02383 582 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CDH18Q13634 790 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BCL2A1Q16548 175 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GPR33Q49SQ1 333 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 Q6ZNB5 142 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 EID3Q8N140 333 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CBARPQ8N350 705 aaPredicted RBP15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GPR26Q8NDV2 337 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 OR10Q1Q8NGQ4 319 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NCLNQ969V3 563 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MUL1Q969V5 352 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NRBF2Q96F24 287 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PPT2Q9UMR5 302 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CORINQ9Y5Q5 1042 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HOXA2O43364 376 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZBTB11O95625 1053 aaPredicted RBP15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BCL10O95999 233 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PCMT1P22061 227 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CA8P35219 290 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TPD52P55327 224 aaPredicted RBP15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AQP6Q13520 282 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CES5AQ6NT32 575 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SLC16A12Q6ZSM3 486 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TPGS1Q6ZTW0 290 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DNAJB8Q8NHS0 232 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FBLIM1Q8WUP2 373 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FAM120BQ96EK7 910 aaKnown RBP15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PYURFQ96I23 114 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MAGED4Q96JG8 741 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SLC32A1Q9H598 525 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 EXD2Q9NVH0 621 aa15.66■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SLC1A7O00341 560 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AXIN1O15169 862 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SLC16A6O15403 523 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KRT6AP02538 564 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KRT6BP04259 564 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ANXA5P08758 320 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MYCLP1P12525 358 aaPredicted RBP15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 S100A3P33764 101 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KRT6CP48668 564 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CSNK1DP48730 415 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NEK2P51955 445 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 B4GALNT1Q00973 533 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 VAC14Q08AM6 782 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TAF12Q16514 161 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DET1Q7L5Y6 550 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ANKRD46Q86W74 232 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SLC15A4Q8N697 577 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NAT16Q8N8M0 369 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HHIPQ96QV1 700 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GDF15Q99988 308 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FUNDC2Q9BWH2 189 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KCTD5Q9NXV2 234 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GPRC5BQ9NZH0 403 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 C3orf18Q9UK00 162 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CLEC4EQ9ULY5 219 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 YBX2Q9Y2T7 364 aaKnown RBP15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 U3KQV3 271 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 OBSL1O75147 1896 aa15.65■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NPIPB15A6NHN6 443 aaPredicted RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 WNT9AO14904 365 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 SOCS5O75159 536 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 C1QCP02747 245 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 HTR1BP28222 390 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 CCR7P32248 378 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 MAGEA2P43356 314 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 RPIAP49247 311 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 ALDH7A1P49419 539 aaKnown RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 SLC14A1Q13336 389 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 TOP3AQ13472 1001 aaPredicted RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 SPCS2Q15005 226 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 TTLL9Q3SXZ7 439 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 ZC3H12BQ5HYM0 836 aaKnown RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 RETSATQ6NUM9 610 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 CRTC1Q6UUV9 634 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 NANOGNBQ7Z5D8 188 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 DNAJB7Q7Z6W7 309 aaPredicted RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 IQCF2Q8IXL9 164 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 BEND7Q8N7W2 519 aaPredicted RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 ARL14EPQ8N8R7 260 aaPredicted RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 BARD1Q99728 777 aaKnown RBP15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 PARVBQ9HBI1 364 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 TRIOO75962 3097 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 J3QRK9 145 aa15.64■□□□□ 0.09
MSH5-SAPCD1-208ENST00000498473 PER2O15055 1255 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms