RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PGM2L1Q6PCE3 622 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KIAA1324Q6UXG2 1013 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC22A15Q8IZD6 547 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SCML4Q8N228 414 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DEPDC4Q8N2C3 294 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC35B4Q969S0 331 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SUCOQ9UBS9 1254 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KLHL3Q9UH77 587 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PCDHGB4Q9UN71 923 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C5orf42Q9H799 3197 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C12orf71A8MTZ7 269 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NUAK1O60285 661 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CST1P01037 141 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MTHFD1P11586 935 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HOXD9P28356 352 aaPredicted RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SPAM1P38567 509 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C1QTNF8P60827 252 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ABATP80404 500 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMEM236Q5W0B7 351 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SYCE2Q6PIF2 218 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 EPGNQ6UW88 154 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MFSD6LQ8IWD5 586 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TRIM43Q96BQ3 446 aaPredicted RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SIPA1Q96FS4 1042 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMEM74Q96NL1 305 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR2AG1Q9H205 316 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CCDC177Q9NQR7 707 aaPredicted RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RIMS3Q9UJD0 308 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 EIF3LQ9Y262 564 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MMP20O60882 483 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ABCB7O75027 752 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FTH1P02794 183 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PCCBP05166 539 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 IL7RP16871 459 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MTPNP58546 118 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PON2Q15165 354 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 STEAP4Q687X5 459 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CADM3Q8N126 398 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CAMKK1Q8N5S9 505 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC30A3Q99726 388 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TTYH2Q9BSA4 534 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NPLQ9BXD5 320 aaPredicted RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ELAC1Q9H777 363 aaKnown RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF490Q9ULM2 529 aaPredicted RBP10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GMPPBQ9Y5P6 360 aa10.49□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PAPPA2Q9BXP8 1791 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ISPDA4D126 451 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C7orf72A4D263 438 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR6C70A6NIJ9 312 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 H0YJX3 145 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ALDH1A2O94788 518 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GPIP06744 558 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ELK4P28324 431 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ARRB2P32121 409 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TIE1P35590 1138 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MAPK12P53778 367 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 VBP1P61758 197 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CD83Q01151 205 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MEF2AQ02078 507 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CACHD1Q5VU97 1274 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC8B1Q6J4K2 584 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PPP4R4Q6NUP7 873 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TRIM69Q86WT6 500 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CHERPQ8IWX8 916 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PIK3R3Q92569 461 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AARSD1Q9BTE6 412 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ANKRD60Q9BZ19 345 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KAT8Q9H7Z6 458 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 IMP3Q9NV31 184 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ING3Q9NXR8 418 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GMPR2Q9P2T1 348 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CNOT11Q9UKZ1 510 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HCFC2Q9Y5Z7 792 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LOXHD1Q8IVV2 1947 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FAM186AA6NE01 2351 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DOCK6Q96HP0 2047 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 G3V2T6 193 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SOCS2O14508 198 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ICMTO60725 284 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CYP4B1P13584 511 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HMGA1P17096 107 aaKnown RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ARNTP27540 789 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ALDH3B2P48448 385 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PRMT2P55345 433 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FAM189BP81408 668 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CACNG1Q06432 222 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PPIGQ13427 754 aaKnown RBP eCLIP10.48□□□□□ -0.735e-7■■■■□ 21.5
MSH5-SAPCD1-207ENST00000493662 PWP1Q13610 501 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SIM2Q14190 667 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ATP13A5Q4VNC0 1218 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KCTD11Q693B1 232 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMEM220Q6QAJ8 160 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PLET1Q6UQ28 207 aa10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CCBE1Q6UXH8 406 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 VASH1Q7L8A9 365 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 REM2Q8IYK8 340 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SH3YL1Q96HL8 342 aaPredicted RBP10.48□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SORT1Q99523 831 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms