RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 DENRO43583 198 aaKnown RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 PIM1P11309 404 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 PCSK6P29122 969 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 PDHA2P29803 388 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 LSAMPQ13449 338 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 PNCKQ6P2M8 343 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 LRRC70Q7Z2Q7 622 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SFRP1Q8N474 314 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 RLN3Q8WXF3 142 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 TMIGD2Q96BF3 282 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 MRPL1Q9BYD6 325 aaKnown RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SLC17A9Q9BYT1 436 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 ZCCHC2Q9C0B9 1178 aaKnown RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SLC32A1Q9H598 525 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 FBRSQ9HAH7 460 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 TRPS1Q9UHF7 1281 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 RNF11Q9Y3C5 154 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 CCL27Q9Y4X3 112 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 ANGPTL3Q9Y5C1 460 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 GPR45Q9Y5Y3 372 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 DMDP11532 3685 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 TRIM38O00635 465 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SH3BP5O60239 455 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 TIPRLO75663 272 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 EPB42P16452 691 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 CKMT2P17540 419 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 MRPL19P49406 292 aaKnown RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 ACADVLP49748 655 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 AP1S2P56377 157 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 RPS21P63220 83 aaKnown RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SGCGQ13326 291 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 AGERQ15109 404 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 CCSMST1Q4G0I0 132 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 TMEM259Q4ZIN3 620 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 HMBOX1Q6NT76 420 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 NEK5Q6P3R8 708 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 DOK6Q6PKX4 331 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SPATA19Q7Z5L4 167 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 HEATR4Q86WZ0 1026 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 ZFP28Q8NHY6 868 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 TMEM159Q96B96 161 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 FBXL8Q96CD0 374 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 HIC2Q96JB3 615 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 LINC00615Q96LM1 132 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 CCT7Q99832 543 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SPOCK3Q9BQ16 436 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 C1QTNF2Q9BXJ5 285 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 LIN28AQ9H9Z2 209 aaKnown RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 SDR39U1Q9NRG7 319 aaPredicted RBP11.81□□□□□ -0.52
HDAC6-230ENST00000488543 AIG1Q9NVV5 245 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 ETAA1Q9NY74 926 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 CA5BQ9Y2D0 317 aa11.81□□□□□ -0.52
HDAC6-230ENST00000488543 FAM149AA5PLN7 773 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 TPST1O60507 370 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 HIST1H2AGP0C0S8 130 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 EBLN1P0CF75 366 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 HIST1H2ADP20671 130 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 ARL1P40616 181 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 BDKRB1P46663 353 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 PIK3CGP48736 1102 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 HNMTP50135 292 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 DIO3P55073 304 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 CDH15P55291 814 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 LRP8Q14114 963 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 ABRAXAS2Q15018 415 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 IRF4Q15306 451 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 PTCHD3Q3KNS1 767 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 RNF165Q6ZSG1 346 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 SYT13Q7L8C5 426 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 C11orf96Q7Z7L8 435 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 TRAPPC5Q8IUR0 188 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 CHCHD4Q8N4Q1 142 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 FAM160A2Q8N612 972 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 MCOLN3Q8TDD5 553 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 HIST1H2AHQ96KK5 128 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 HIST1H2AJQ99878 128 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 H2AFJQ9BTM1 129 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 TPSD1Q9BZJ3 242 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 TBC1D17Q9HA65 648 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 NCKAP1Q9Y2A7 1128 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 SDK1Q7Z5N4 2213 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 KCNE1BA0A087WTH5 132 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 H3BSA7 217 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 MRASO14807 208 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 VEGFDO43915 354 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 PRAMEF4O60810 478 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 WDR47O94967 919 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 DCNP07585 359 aaKnown RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 SNRPB2P08579 225 aaKnown RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 ZNF26P17031 533 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 HMOX2P30519 316 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 SLC7A2P52569 658 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 STX1BP61266 288 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 CAPRIN1Q14444 709 aaKnown RBP11.8□□□□□ -0.52
HDAC6-230ENST00000488543 MAPRE2Q15555 327 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 C6orf136Q5SQH8 315 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 PRAMEF9Q5VWM5 478 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 IL27RAQ6UWB1 636 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 USP30Q70CQ3 517 aa11.8□□□□□ -0.52
HDAC6-230ENST00000488543 RETREG3Q86VR2 466 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms