RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 PDE10AQ9Y233 779 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 AP3M1Q9Y2T2 418 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 H3BSA7 217 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 TPST2O60704 377 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 UMPSP11172 480 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 AP1S2P56377 157 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 GPAT3Q53EU6 434 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 IER5LQ5T953 404 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 ANXA8L1Q5VT79 327 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CYP4Z1Q86W10 505 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 OR7A2PQ8NGA2 310 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 ZNF483Q8TF39 744 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CMTM6Q9NX76 183 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 H2AFY2Q9P0M6 372 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 GRXCR1A8MXD5 290 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 FAM220BPB1ANY3 271 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CACNB4O00305 520 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 LATO43561 262 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 TULP3O75386 442 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 TUBB3Q13509 450 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 FAM91A1Q658Y4 838 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 NANOGNBQ7Z5D8 188 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 RETREG3Q86VR2 466 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 FAM129CQ86XR2 697 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 TFGQ92734 400 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 FOXJ1Q92949 421 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 GLYATL1Q969I3 302 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 ZNF641Q96N77 438 aaPredicted RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 VPS35Q96QK1 796 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 C1QTNF7Q9BXJ2 289 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 AASDHPPTQ9NRN7 309 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 OARD1Q9Y530 152 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 COMMD3-BMI1R4GMX3 469 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 SLC28A2O43868 658 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 SCELO95171 688 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 F11P03951 625 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 BUD31P41223 144 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 MRPL58Q14197 206 aaKnown RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 PDGFRLQ15198 375 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 ZNF805Q5CZA5 627 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 PAGE2Q7Z2X7 111 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 R3HCC1LQ7Z5L2 792 aaKnown RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 SLC29A1Q99808 456 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 IL23AQ9NPF7 189 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 GALNT8Q9NY28 637 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 FBXW2Q9UKT8 454 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 USP22Q9UPT9 525 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 TMA7Q9Y2S6 64 aaKnown RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 NUP214P35658 2090 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 CNOT3O75175 753 aaKnown RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 RSL1D1O76021 490 aaKnown RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 SBK3P0C264 359 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 LINGO3P0C6S8 592 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 GPX3P22352 226 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 S100A5P33763 92 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 BMPR1AP36894 532 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 ASMTP46597 345 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 HNMTP50135 292 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 PPP2R2DQ66LE6 453 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 THAP5Q7Z6K1 395 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 ZNF605Q86T29 641 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 DDHD1Q8NEL9 900 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 FBP2O00757 339 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 HTRA2O43464 458 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 OR10H3O60404 316 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 SNAP29O95721 258 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 PRLP01236 227 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 CTSEP14091 401 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 ZNF30P17039 623 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 PRPS1L1P21108 318 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 RFC2P35250 354 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 TLDC1Q6P9B6 456 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 HSD11B1LQ7Z5J1 315 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 C11orf65Q8NCR3 313 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 PIH1D2Q8WWB5 315 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 CLIP3Q96DZ5 547 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 QRFPRQ96P65 431 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 KLHL25Q9H0H3 589 aa12.87□□□□□ -0.35
HMGN1-216ENST00000486741 SDR39U1Q9NRG7 319 aaPredicted RBP12.87□□□□□ -0.35
HMGN1-216ENST00000486741 ATP6V1G1O75348 118 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 ALDH4A1P30038 563 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 NTSP30990 170 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 CAPGP40121 348 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 MAGEA12P43365 314 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 LBX1P52954 281 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 CDH12P55289 794 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 DMPKQ09013 629 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 C9orf64Q5T6V5 341 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 CCSAPQ6IQ19 270 aaPredicted RBP12.86□□□□□ -0.35
HMGN1-216ENST00000486741 GPR153Q6NV75 609 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 LRRC70Q7Z2Q7 622 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 YIPF4Q9BSR8 244 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 CXorf21Q9HAI6 301 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 USE1Q9NZ43 259 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 BCKDKO14874 412 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 RASGRP1O95267 797 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 CA3P07451 260 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 CCR7P32248 378 aa12.86□□□□□ -0.35
HMGN1-216ENST00000486741 ZXDBP98169 803 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms