RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 C19orf60Q96EN9 201 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 FOPNLQ96NB1 174 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 PSMG3-AS1Q96PY0 264 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 ACAT2Q9BWD1 397 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 ZNF552Q9H707 407 aaPredicted RBP20.65■□□□□ 0.9
USP40-215ENST00000484528 GALPQ9UBC7 116 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 CTSFQ9UBX1 484 aa20.65■□□□□ 0.9
USP40-215ENST00000484528 A0A0J9YVX5 310 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 TCP11X1B4DZS4 312 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 MED26O95402 600 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 GPS1Q13098 491 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 MRPL49Q13405 166 aaKnown RBP20.64■□□□□ 0.89
USP40-215ENST00000484528 FASTKQ14296 549 aaKnown RBP20.64■□□□□ 0.89
USP40-215ENST00000484528 KCNJ11Q14654 390 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 NKG7Q16617 165 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 PLEKHN1Q494U1 663 aaPredicted RBP20.64■□□□□ 0.89
USP40-215ENST00000484528 TCTE1Q5JU00 501 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 FHL5Q5TD97 284 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 ANKRD22Q5VYY1 191 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 CASC4Q6P4E1 433 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 ZNF662Q6ZS27 426 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 OVCH1Q7RTY7 1134 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 OR2L3Q8NG85 312 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 FKBP10Q96AY3 582 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 SPSB2Q99619 263 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 SOX17Q9H6I2 414 aaPredicted RBP20.64■□□□□ 0.89
USP40-215ENST00000484528 ZBTB20Q9HC78 741 aaPredicted RBP20.64■□□□□ 0.89
USP40-215ENST00000484528 LRRC4CQ9HCJ2 640 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 SLC6A20Q9NP91 592 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 C5AR2Q9P296 337 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 CDC23Q9UJX2 597 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 FBXL4Q9UKA2 621 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 MRFAP1Q9Y605 127 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 MAU2Q9Y6X3 613 aa20.64■□□□□ 0.89
USP40-215ENST00000484528 A0A1W2PPV9 198 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 AGPSO00116 658 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 IGHEP01854 428 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 ALPPP05187 535 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 CHRM3P20309 590 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 ITGA3P26006 1051 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 CCNFP41002 786 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 CDK16Q00536 496 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 TSTA3Q13630 321 aaPredicted RBP20.63■□□□□ 0.89
USP40-215ENST00000484528 ACSBG2Q5FVE4 666 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.63■□□□□ 0.89
USP40-215ENST00000484528 WASHC2DQ5SRD0 308 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 RNF187Q5TA31 235 aaPredicted RBP20.63■□□□□ 0.89
USP40-215ENST00000484528 KIAA0930Q6ICG6 404 aaPredicted RBP20.63■□□□□ 0.89
USP40-215ENST00000484528 TTC27Q6P3X3 843 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 PIAS4Q8N2W9 510 aaPredicted RBP20.63■□□□□ 0.89
USP40-215ENST00000484528 OR2A1Q8NGT9 310 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 ZUFSPQ96AP4 578 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 ZNF285Q96NJ3 590 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 ATP13A2Q9NQ11 1180 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 STOX2Q9P2F5 926 aaPredicted RBP20.63■□□□□ 0.89
USP40-215ENST00000484528 FAM169AQ9Y6X4 670 aa20.63■□□□□ 0.89
USP40-215ENST00000484528 SVILO95425 2214 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 LOC105369274A0A096LPK9 316 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 LOC102723532A0A0G2JNH3 316 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 ARHGEF33A8MVX0 844 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 TARM1B6A8C7 271 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 SEMA7AO75326 666 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 FKBP9O95302 570 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 KRT14P02533 472 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 ESR1P03372 595 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 EIF2S1P05198 315 aaKnown RBP20.62■□□□□ 0.89
USP40-215ENST00000484528 MMP11P24347 488 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 CCZ1BP86790 482 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 CCZ1P86791 482 aaPredicted RBP20.62■□□□□ 0.89
USP40-215ENST00000484528 GBX1Q14549 363 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 EIF2S3LQ2VIR3 472 aaKnown RBP20.62■□□□□ 0.89
USP40-215ENST00000484528 HIST2H2BCQ6DN03 193 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 CENPUQ71F23 418 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 LRRC8AQ8IWT6 810 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 OR4N4Q8N0Y3 316 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 HMGCLL1Q8TB92 370 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 ZNF669Q96BR6 464 aaPredicted RBP20.62■□□□□ 0.89
USP40-215ENST00000484528 WDR54Q9H977 334 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 SPATA7Q9P0W8 599 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 ZC3H7BQ9UGR2 993 aaKnown RBP20.62■□□□□ 0.89
USP40-215ENST00000484528 B3GNT3Q9Y2A9 372 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 HS3ST3B1Q9Y662 390 aa20.62■□□□□ 0.89
USP40-215ENST00000484528 HYKKA2RU49 373 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 E5RI56 91 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 H3BMM5 538 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 GOLGA8MH3BSY2 632 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 SOCS6O14544 535 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 PFDN6O15212 129 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 MATN4O95460 622 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 RNF224P0DH78 156 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 PIM1P11309 404 aaPredicted RBP20.61■□□□□ 0.89
USP40-215ENST00000484528 PKMP14618 531 aaKnown RBP20.61■□□□□ 0.89
USP40-215ENST00000484528 OGNP20774 298 aaKnown RBP20.61■□□□□ 0.89
USP40-215ENST00000484528 YOD1Q5VVQ6 348 aaPredicted RBP20.61■□□□□ 0.89
USP40-215ENST00000484528 ZNF470Q6ECI4 717 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 NEPROQ6NW34 567 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 SUSD1Q6UWL2 747 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 CAND1Q86VP6 1230 aaKnown RBP20.61■□□□□ 0.89
USP40-215ENST00000484528 CILP2Q8IUL8 1156 aa20.61■□□□□ 0.89
USP40-215ENST00000484528 PRSS58Q8IYP2 241 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms