RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 FLRT3Q9NZU0 649 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 IL17BQ9UHF5 180 aa2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.71□□□□□ -1.98
CCDC88A-212ENST00000474059 COL4A4P53420 1690 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 ELOVL7A1L3X0 281 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 TMEM221A6NGB7 291 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 KLLNB2CW77 178 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 TSPAN1O60635 241 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 MED24O75448 989 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 CELF2O95319 508 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 HSPA4LO95757 839 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 QDPRP09417 244 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 CCDC175P0C221 793 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 DANCRP0C864 163 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 CKMT2P17540 419 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 CDC25CP30307 473 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 RAB28P51157 221 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 THOP1P52888 689 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 PNRC1Q12796 327 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 PLA2G7Q13093 441 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 PRKAA1Q13131 559 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 CAMK2DQ13557 499 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 KLHL26Q53HC5 615 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 C2CD6Q53TS8 623 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 KRBOX4Q5JUW0 171 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 ARMC4Q5T2S8 1044 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 GRTP1Q5TC63 336 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 CCDC186Q7Z3E2 898 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 SLFN11Q7Z7L1 901 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 VSIG1Q86XK7 387 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 PLD3Q8IV08 490 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 LSMEM2Q8N112 164 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 DCLK2Q8N568 766 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 PI4KAP1Q8N8J0 262 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 TMEM178AQ8NBL3 297 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 MOSPD2Q8NHP6 518 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 MRPS27Q92552 414 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 DAZLQ92904 295 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 HDAC11Q96DB2 347 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 FER1L6-AS2Q96M78 137 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 NAA11Q9BSU3 229 aaPredicted RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 FAM129AQ9BZQ8 928 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 NOL11Q9H8H0 719 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 TBC1D17Q9HA65 648 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 PIH1D3Q9NQM4 214 aaKnown RBP2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 MIOSQ9NXC5 875 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 SLC24A2Q9UI40 661 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 TUBE1Q9UJT0 475 aa2.7□□□□□ -1.98
CCDC88A-212ENST00000474059 IGHV4-61A0A0C4DH41 118 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 OR6C76A6NM76 312 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 SRRM5B3KS81 715 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 TRIM77I1YAP6 450 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 ZNF197O14709 1029 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 BCL2L11O43521 198 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 OR10H2O60403 315 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 IGHV4-59P01825 116 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 OR52Z1P0C646 297 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 OR2T7P0C7T2 308 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 ZSCAN5DPP0CG00 497 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 ACP2P11117 423 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 GLULP15104 373 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 ERCC2P18074 760 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 ACHEP22303 614 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 CBLP22681 906 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 PTAFRP25105 342 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 PCGF2P35227 344 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 PSMC4P43686 418 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 CDH11P55287 796 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 MS4A2Q01362 244 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 RBPJQ06330 500 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 HSPB3Q12988 150 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 PEX6Q13608 980 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 HNRNPDQ14103 355 aaKnown RBP2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 COG2Q14746 738 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 PTPRCAPQ14761 206 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 TNIP1Q15025 636 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 VWC2Q2TAL6 325 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 SLC25A30Q5SVS4 291 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 WLSQ5T9L3 541 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 KLC3Q6P597 504 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 FAM47EQ6ZV65 393 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 SLC16A9Q7RTY1 509 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 CENPVQ7Z7K6 275 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 CEP57L1Q8IYX8 460 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 NIPA2Q8N8Q9 360 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 PPFIBP2Q8ND30 876 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 OR5M8Q8NGP6 311 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 OR2T11Q8NH01 316 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 KIF18AQ8NI77 898 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 MTERF3Q96E29 417 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 SPDL1Q96EA4 605 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 NUP85Q9BW27 656 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 WNT5BQ9H1J7 359 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 SH3GLB2Q9NR46 395 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 SPIN1Q9Y657 262 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 ATRXP46100 2492 aa2.69□□□□□ -1.98
CCDC88A-212ENST00000474059 IGLV3-10A0A075B6K4 115 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 A0A1W2PRQ8 180 aa2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 MED19A0JLT2 244 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-212ENST00000474059 KPNA7A9QM74 516 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms