RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TUBB4BP68371 445 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 IRF9Q00978 393 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 ACY1Q03154 408 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 TAP2Q03519 686 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SP140Q13342 867 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 NAB1Q13506 487 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SLC29A2Q14542 456 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 IL11RAQ14626 422 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 TSNQ15631 228 aaKnown RBP11.22□□□□□ -0.61
CUX1-207ENST00000465461 ZKSCAN8Q15776 578 aaPredicted RBP11.22□□□□□ -0.61
CUX1-207ENST00000465461 FBXO48Q5FWF7 155 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 THEMIS2Q5TEJ8 643 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 FIGLAQ6QHK4 219 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 AGTRAPQ6RW13 159 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SBSNQ6UWP8 590 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 CARFQ8N187 725 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 DNAJC22Q8N4W6 341 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 GALNT6Q8NCL4 622 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SLC44A1Q8WWI5 657 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SMPDL3AQ92484 453 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SLC22A18Q96BI1 424 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 PYCR2Q96C36 320 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 TSPAN17Q96FV3 270 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 MED8Q96G25 268 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 TCTN2Q96GX1 697 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 PDLIM5Q96HC4 596 aaKnown RBP11.22□□□□□ -0.61
CUX1-207ENST00000465461 HIST1H2AHQ96KK5 128 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 CCDC138Q96M89 665 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 PAFAH2Q99487 392 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 HIST1H2AJQ99878 128 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 H2AFJQ9BTM1 129 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 ASPSCR1Q9BZE9 553 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SPRY4Q9C004 299 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 EPB41L4BQ9H329 900 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 AKIRIN1Q9H9L7 192 aaPredicted RBP11.22□□□□□ -0.61
CUX1-207ENST00000465461 POPDC3Q9HBV1 291 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 STARD5Q9NSY2 213 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 ARL15Q9NXU5 204 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 CTNNAL1Q9UBT7 734 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 SH2B3Q9UQQ2 575 aa11.22□□□□□ -0.61
CUX1-207ENST00000465461 TPRP12270 2363 aaKnown RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 URB1O60287 2271 aaKnown RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 A0A087WV48 116 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 IGKV1-8A0A0C4DH67 115 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 NCF1BA6NI72 391 aaPredicted RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 NCF1CA8MVU1 366 aaPredicted RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 STMND1H3BQB6 276 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 RRP8O43159 456 aaKnown RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 RAD1O60671 282 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 CTSVO60911 334 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 SLC35E2BP0CK96 405 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 LIPCP11150 499 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 NCF1P14598 390 aaPredicted RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 GCAP28676 217 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 MSH2P43246 934 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 TBPL1P62380 186 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 NAE1Q13564 534 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 NAA30Q147X3 362 aaPredicted RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 ARHGAP19Q14CB8 494 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 OR4D1Q15615 310 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 PPP1R3AQ16821 1122 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 ERCC6LQ2NKX8 1250 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 LRRC69Q6ZNQ3 347 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 TRMT10CQ7L0Y3 403 aaKnown RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 DTX1Q86Y01 620 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 TMEM126BQ8IUX1 230 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 SLC38A9Q8NBW4 561 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 DCAKDQ8WVC6 231 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 KCTD4Q8WVF5 259 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 UBLCP1Q8WVY7 318 aaPredicted RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 N4BP2L2Q92802 583 aaPredicted RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 NKD1Q969G9 470 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 PTERQ96BW5 349 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 NXNL1Q96CM4 212 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 TEFMQ96QE5 360 aaKnown RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 DPH7Q9BTV6 452 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 SYNPO2LQ9H987 977 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 MRPS30Q9NP92 439 aaKnown RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 SNX15Q9NRS6 342 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 IGSF5Q9NSI5 407 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 CUEDC1Q9NWM3 386 aaPredicted RBP11.21□□□□□ -0.61
CUX1-207ENST00000465461 PILRAQ9UKJ1 303 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 ACSL6Q9UKU0 697 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 ACACBO00763 2458 aa11.21□□□□□ -0.61
CUX1-207ENST00000465461 APC2O95996 2303 aa11.21□□□□□ -0.62
CUX1-207ENST00000465461 PCM1Q15154 2024 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 A0A0J9YVX5 310 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 LOC101059948A0A1B0GTJ6 334 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 EXOC1LA0A1B0GW35 172 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 EFSO43281 561 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 MAP3K7O43318 606 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 SCRG1O75711 98 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 DLGAP3O95886 979 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 ALDOAP04075 364 aaKnown RBP11.2□□□□□ -0.62
CUX1-207ENST00000465461 SHBGP04278 402 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 C2P06681 752 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 INHBAP08476 426 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 WT1P19544 449 aaPredicted RBP11.2□□□□□ -0.62
CUX1-207ENST00000465461 TNFRSF8P28908 595 aa11.2□□□□□ -0.62
CUX1-207ENST00000465461 CMPK1P30085 196 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms