RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, human

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPA-223	ENST00000452489	DEFB106A	Q8N104	65 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	DNAJC22	Q8N4W6	341 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	OR8J3	Q8NGG0	315 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	MYDGF	Q969H8	173 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	TEKT5	Q96M29	485 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	TBL1Y	Q9BQ87	522 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	MRPL45	Q9BRJ2	306 aa	Known RBP	18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	FICD	Q9BVA6	458 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	SERHL2	Q9H4I8	314 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	ACTL8	Q9H568	366 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	EXOSC4	Q9NPD3	245 aa	Known RBP	18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	SIRT5	Q9NXA8	310 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	KIF17	Q9P2E2	1029 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	KLK4	Q9Y5K2	254 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	SHROOM3	Q8TF72	1996 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	LACTBL1	A8MY62	500 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	ZNF254	O75437	659 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	RRAS2	P62070	204 aa	Predicted RBP	18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	MRPL28	Q13084	256 aa	Known RBP	18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	GLYR1	Q49A26	553 aa	Predicted RBP	18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	C6orf136	Q5SQH8	315 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	CACHD1	Q5VU97	1274 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	PRR5L	Q6MZQ0	368 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	GPR153	Q6NV75	609 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	RNF130	Q86XS8	419 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	SLC44A2	Q8IWA5	706 aa	Predicted RBP	18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	GPALPP1	Q8IXQ4	340 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	C10orf111	Q8N326	155 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	ATG16L2	Q8NAA4	619 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	KIF12	Q96FN5	646 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	SIPA1	Q96FS4	1042 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	SENP8	Q96LD8	212 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	ASPN	Q9BXN1	380 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	ASB7	Q9H672	318 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	SNTG1	Q9NSN8	517 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	VPS9D1	Q9Y2B5	631 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	PCDHGA6	Q9Y5G7	932 aa		18.18	■□□□□ 0.5
PTPA-223	ENST00000452489	MYLK	Q15746	1914 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489		E9PAM4	449 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	FABP7	O15540	132 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	RPS6KA4	O75676	772 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	MRPL19	P49406	292 aa	Known RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	KCNC3	Q14003	757 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	FBXO43	Q4G163	708 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	XKR7	Q5GH72	579 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	NOMO2	Q5JPE7	1267 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	OTUD1	Q5VV17	481 aa	Predicted RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	SMYD5	Q6GMV2	418 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	KLHL17	Q6TDP4	642 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	SNX20	Q7Z614	316 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	RAB44	Q7Z6P3	723 aa	Predicted RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	METTL3	Q86U44	580 aa	Known RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	ATCAY	Q86WG3	371 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	TSPAN17	Q96FV3	270 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	HBEGF	Q99075	208 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	ELOVL6	Q9H5J4	265 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	IFT46	Q9NQC8	304 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	PAK6	Q9NQU5	681 aa	Predicted RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	TREX1	Q9NSU2	369 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	MRPS7	Q9Y2R9	242 aa	Known RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	CLCA1	A8K7I4	914 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	HCRT	O43612	131 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	TRIM3	O75382	744 aa	Predicted RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	SCEL	O95171	688 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	G6PD	P11413	515 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	CD1D	P15813	335 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	CLCN5	P51795	746 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	NPRL3	Q12980	569 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	LCP2	Q13094	533 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	PCBP1	Q15365	356 aa	Known RBP eCLIP	18.17	■□□□□ 0.5	4e-7	■■■■□ 25.8
PTPA-223	ENST00000452489	SLC14A2	Q15849	920 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	SUPT20HL1	Q3ZLR7	823 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	GTDC1	Q4AE62	458 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	PDZK1	Q5T2W1	519 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	FAM171A1	Q5VUB5	890 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	GCNT7	Q6ZNI0	430 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	GPR149	Q86SP6	731 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	GDPD1	Q8N9F7	314 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	FAM149B1	Q96BN6	582 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	MS4A7	Q9GZW8	240 aa	Predicted RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	RPF1	Q9H9Y2	349 aa	Known RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	OLA1	Q9NTK5	396 aa	Known RBP	18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	NME7	Q9Y5B8	376 aa		18.17	■□□□□ 0.5
PTPA-223	ENST00000452489	ZNF98	A6NK75	572 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	CCL22	O00626	93 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	PDE9A	O76083	593 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	FCER2	P06734	321 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	ZNF273	Q14593	569 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	MED22	Q15528	200 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	LEXM	Q3ZCV2	418 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	UPRT	Q96BW1	309 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	PYURF	Q96I23	114 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	TEPSIN	Q96N21	525 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	MAGIX	Q9H6Y5	334 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	HEXA-AS1	Q9H8Q6	139 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	QTRT2	Q9H974	415 aa	Known RBP	18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	FANCF	Q9NPI8	374 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	RAD18	Q9NS91	495 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	ZNF225	Q9UK10	706 aa		18.16	■□□□□ 0.5
PTPA-223	ENST00000452489	CNP	P09543	421 aa	Known RBP	18.16	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms