RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 RRADP55042 308 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 CTBP1Q13363 440 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 FASTKQ14296 549 aaKnown RBP11.96□□□□□ -0.49
CPSF4-208ENST00000452047 SSPNQ14714 243 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 KLHL38Q2WGJ6 581 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 ZC3H12BQ5HYM0 836 aaKnown RBP11.96□□□□□ -0.49
CPSF4-208ENST00000452047 ZNF549Q6P9A3 640 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 RAB42Q8N4Z0 105 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 MAGEC3Q8TD91 643 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 DLG3Q92796 817 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 ZUFSPQ96AP4 578 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 SIGLEC10Q96LC7 697 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 MIPEPQ99797 713 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 NUDT9Q9BW91 350 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 GRPEL1Q9HAV7 217 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 NDOR1Q9UHB4 597 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 GPN3Q9UHW5 284 aaPredicted RBP11.96□□□□□ -0.49
CPSF4-208ENST00000452047 SNX12Q9UMY4 172 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 PLAAQ9Y263 795 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 PTRH2Q9Y3E5 179 aaKnown RBP11.96□□□□□ -0.49
CPSF4-208ENST00000452047 PCDHGB7Q9Y5F8 929 aa11.96□□□□□ -0.49
CPSF4-208ENST00000452047 UTP20O75691 2785 aaKnown RBP11.96□□□□□ -0.5
CPSF4-208ENST00000452047 E5RI56 91 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 DSCR3O14972 297 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 ZNF185O15231 689 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 CD63P08962 238 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 FOLR3P41439 243 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 SLC1A2P43004 574 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 ARSFP54793 590 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 MLLT10P55197 1068 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 YBX1P67809 324 aaKnown RBP11.95□□□□□ -0.5
CPSF4-208ENST00000452047 GRM7Q14831 915 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 NADK2Q4G0N4 442 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 TCTE1Q5JU00 501 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 RNASEH2BQ5TBB1 312 aaKnown RBP11.95□□□□□ -0.5
CPSF4-208ENST00000452047 FRMPD2BQ6IN97 320 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 TTLL10Q6ZVT0 673 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 NEK10Q6ZWH5 1172 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 COX15Q7KZN9 410 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 RNF44Q7L0R7 432 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 PPP1R32Q7Z5V6 425 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 SPNS2Q8IVW8 549 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 OR9A1PQ8NGU1 263 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 GRK7Q8WTQ7 553 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 KCNJ9Q92806 393 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 FKBP10Q96AY3 582 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 IP6K3Q96PC2 410 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 SMAD5Q99717 465 aaKnown RBP11.95□□□□□ -0.5
CPSF4-208ENST00000452047 SELENOSQ9BQE4 189 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 FBXO6Q9NRD1 293 aaPredicted RBP11.95□□□□□ -0.5
CPSF4-208ENST00000452047 CUTCQ9NTM9 273 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 KLHL42Q9P2K6 505 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 ZNF451Q9Y4E5 1061 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 DOPEY2Q9Y3R5 2298 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 SHANK1Q9Y566 2161 aa11.95□□□□□ -0.5
CPSF4-208ENST00000452047 MDC1Q14676 2089 aaKnown RBP11.95□□□□□ -0.5
CPSF4-208ENST00000452047 GOLGA6L10A0A0M3HER8 536 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 OR2A25A4D2G3 310 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 CTAGE9A4FU28 777 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 CLEC18AA5D8T8 446 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 ZSCAN12O43309 604 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 SRPX2O60687 465 aaPredicted RBP11.94□□□□□ -0.5
CPSF4-208ENST00000452047 SORBS2O94875 1100 aaKnown RBP11.94□□□□□ -0.5
CPSF4-208ENST00000452047 MED26O95402 600 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 ATXN8OSP0DMR3 200 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 ALAS2P22557 587 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 THOC5Q13769 683 aaKnown RBP11.94□□□□□ -0.5
CPSF4-208ENST00000452047 ARHGAP19Q14CB8 494 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 LONRF1Q17RB8 773 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 DCAF10Q5QP82 559 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 YOD1Q5VVQ6 348 aaPredicted RBP11.94□□□□□ -0.5
CPSF4-208ENST00000452047 CLEC18BQ6UXF7 455 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 OVCH1Q7RTY7 1134 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 LMNTD2Q8IXW0 634 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 PPIL6Q8IXY8 311 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 DTWD1Q8N5C7 304 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 CLEC18CQ8NCF0 446 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 FBXO15Q8NCQ5 510 aaPredicted RBP11.94□□□□□ -0.5
CPSF4-208ENST00000452047 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.94□□□□□ -0.5
CPSF4-208ENST00000452047 SLCO2A1Q92959 643 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 PTERQ96BW5 349 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 SPSB2Q99619 263 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 ACAT2Q9BWD1 397 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 DDX47Q9H0S4 455 aaKnown RBP11.94□□□□□ -0.5
CPSF4-208ENST00000452047 SLC26A1Q9H2B4 701 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 WDR54Q9H977 334 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 SLC6A20Q9NP91 592 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 FAM114A2Q9NRY5 505 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 GPR83Q9NYM4 423 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 MAD1L1Q9Y6D9 718 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 MAST4O15021 2626 aa11.94□□□□□ -0.5
CPSF4-208ENST00000452047 RP1L1Q8IWN7 2480 aaPredicted RBP11.93□□□□□ -0.5
CPSF4-208ENST00000452047 LOC105369274A0A096LPK9 316 aa11.93□□□□□ -0.5
CPSF4-208ENST00000452047 IGKV1-8A0A0C4DH67 115 aa11.93□□□□□ -0.5
CPSF4-208ENST00000452047 LOC102723532A0A0G2JNH3 316 aa11.93□□□□□ -0.5
CPSF4-208ENST00000452047 A6NL46 340 aa11.93□□□□□ -0.5
CPSF4-208ENST00000452047 GFYI3L273 518 aa11.93□□□□□ -0.5
CPSF4-208ENST00000452047 SLC16A8O95907 504 aa11.93□□□□□ -0.5
CPSF4-208ENST00000452047 ALBP02768 609 aa11.93□□□□□ -0.5
CPSF4-208ENST00000452047 CATP04040 527 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms