RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 FAM78AQ5JUQ0 283 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 TPRG1Q6ZUI0 275 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 USP45Q70EL2 814 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 TMEM126BQ8IUX1 230 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 NETO1Q8TDF5 533 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 FRS2Q8WU20 508 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 MYOCQ99972 504 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 MRPS26Q9BYN8 205 aaKnown RBP9.21□□□□□ -0.93
CUX1-206ENST00000437600 ZIM2Q9NZV7 527 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 NEUROG3Q9Y4Z2 214 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 ST14Q9Y5Y6 855 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 GMEB1Q9Y692 573 aa9.21□□□□□ -0.93
CUX1-206ENST00000437600 A0A0J9YVX5 310 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 IFRD1O00458 451 aaPredicted RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 GNGT2O14610 69 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 SOCS5O75159 536 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 KCNH1O95259 989 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 POP4O95707 220 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 ANXA5P08758 320 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 NSG1P42857 185 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 RPS9P46781 194 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 STT3AP46977 705 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 DGKGP49619 791 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 NR1H2P55055 460 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 HPCAP84074 193 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 BNIP2Q12982 314 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 APOFQ13790 326 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 KIAA0040Q15053 153 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 IER5LQ5T953 404 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 OR4F3Q6IEY1 312 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 GDPD4Q6W3E5 623 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 TMEM179BQ7Z7N9 219 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 CLVS1Q8IUQ0 354 aaPredicted RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 PDPRQ8NCN5 879 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 OR7A2PQ8NGA2 310 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 ELMO1Q92556 727 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 ISG20Q96AZ6 181 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 PDLIM5Q96HC4 596 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 DPH2Q9BQC3 489 aaPredicted RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 RIOK2Q9BVS4 552 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 RBM38Q9H0Z9 239 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 ADNPQ9H2P0 1102 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 PRO3102Q9H379 93 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 ELOVL6Q9H5J4 265 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 CLK4Q9HAZ1 481 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 EIF3LQ9Y262 564 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 PRKAB1Q9Y478 270 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 SAP18O00422 153 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 RGS14O43566 566 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 CLDN9O95484 217 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 ENO2P09104 434 aaPredicted RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 PSMA3P25788 255 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 BMP8BP34820 402 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 HSPA13P48723 471 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 CTSCP53634 463 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 GRAMD4Q6IC98 578 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 SULT1C3Q6IMI6 304 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 PRMT9Q6P2P2 845 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 NPAS3Q8IXF0 933 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 DHRSXQ8N5I4 330 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 BARD1Q99728 777 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 RPP25Q9BUL9 199 aaKnown RBP9.21□□□□□ -0.94
CUX1-206ENST00000437600 ANKRD60Q9BZ19 345 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 IRF2BPLQ9H1B7 796 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 MRGBPQ9NV56 204 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 CLEC1BQ9P126 229 aa9.21□□□□□ -0.94
CUX1-206ENST00000437600 SMIM31A0A1B0GVY4 71 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 E2F6O75461 281 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 CPSF4O95639 269 aaKnown RBP9.2□□□□□ -0.94
CUX1-206ENST00000437600 CST1P01037 141 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 NTRK1P04629 796 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 HIST1H2AGP0C0S8 130 aaPredicted RBP9.2□□□□□ -0.94
CUX1-206ENST00000437600 ADH5P11766 374 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 HIST1H2ADP20671 130 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 AQP1P29972 269 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 WASP42768 502 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 SPINT3P49223 89 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 GALK1P51570 392 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 PMS2P3Q13401 168 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 PWP1Q13610 501 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 SLC36A3Q495N2 470 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 GPR107Q5VW38 600 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 SPESP1Q6UW49 350 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 LPCAT2Q7L5N7 544 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 ZNF551Q7Z340 670 aaPredicted RBP9.2□□□□□ -0.94
CUX1-206ENST00000437600 GALNT5Q7Z7M9 940 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 HIST1H2AHQ96KK5 128 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 MRGPRX3Q96LB0 322 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 HIST1H2AJQ99878 128 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 H2AFJQ9BTM1 129 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 TRIM15Q9C019 465 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 PCDH12Q9NPG4 1184 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 PNPLA3Q9NST1 481 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 TBC1D14Q9P2M4 693 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 CNOT11Q9UKZ1 510 aaKnown RBP9.2□□□□□ -0.94
CUX1-206ENST00000437600 N6AMT1Q9Y5N5 214 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 DGKBQ9Y6T7 804 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 TCF20Q9UGU0 1960 aaKnown RBP9.2□□□□□ -0.94
CUX1-206ENST00000437600 DOCK9Q9BZ29 2069 aa9.2□□□□□ -0.94
CUX1-206ENST00000437600 SDK1Q7Z5N4 2213 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms