RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 DNASE1L3Q13609 305 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 ZIC1Q15915 447 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 DEFB110Q30KQ9 67 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 SOWAHCQ53LP3 525 aaPredicted RBP10.53□□□□□ -0.72
USP49-204ENST00000423567 RBM20Q5T481 1227 aaKnown RBP10.53□□□□□ -0.72
USP49-204ENST00000423567 C16orf46Q6P387 395 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 TLDC1Q6P9B6 456 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 FIGLAQ6QHK4 219 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 STRA8Q7Z7C7 330 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 CTAGE6Q86UF2 777 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 CCDC25Q86WR0 208 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 CTAGE4Q8IX94 777 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 SYTL1Q8IYJ3 562 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 LMNTD1Q8N9Z9 388 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 KIF18AQ8NI77 898 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 DENND1AQ8TEH3 1009 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 CT55Q8WUE5 264 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 ASB11Q8WXH4 323 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 SEC14L1Q92503 715 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 LINGO1Q96FE5 620 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 VPS39Q96JC1 886 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 HIST1H2AHQ96KK5 128 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 PKP4Q99569 1192 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 HIST1H2AJQ99878 128 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 DPH2Q9BQC3 489 aaPredicted RBP10.53□□□□□ -0.72
USP49-204ENST00000423567 H2AFJQ9BTM1 129 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 SLC12A9Q9BXP2 914 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 GPR87Q9BY21 358 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 FAM117AQ9C073 453 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 TWSG1Q9GZX9 223 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 PLAC1Q9HBJ0 212 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 FAM60AQ9NP50 221 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 UTP6Q9NYH9 597 aaKnown RBP10.53□□□□□ -0.72
USP49-204ENST00000423567 MOCS1Q9NZB8 636 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 GRHL1Q9NZI5 618 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 IL17BQ9UHF5 180 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 SRPK3Q9UPE1 567 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 KLHL20Q9Y2M5 609 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 SDK2Q58EX2 2172 aa10.53□□□□□ -0.72
USP49-204ENST00000423567 KRT87PA6NCN2 255 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 TARM1B6A8C7 271 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 C9J4A7 227 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 GFYI3L273 518 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 MEN1O00255 615 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 SLC16A5O15375 505 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 NKX2-8O15522 239 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 ZSCAN9O15535 394 aaPredicted RBP10.52□□□□□ -0.73
USP49-204ENST00000423567 SLC16A8O95907 504 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 GSTA2P09210 222 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 PRKAR1AP10644 381 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 SAT1P21673 171 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 FDXRP22570 491 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 SLC12A2P55011 1212 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 CDKN2DP55273 166 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 CYP4F2P78329 520 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 CDC20Q12834 499 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 GPS2Q13227 327 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 CRTC2Q53ET0 693 aaPredicted RBP10.52□□□□□ -0.73
USP49-204ENST00000423567 TCTE1Q5JU00 501 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 THEMIS2Q5TEJ8 643 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 PRAMEF17Q5VTA0 474 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 PAQR3Q6TCH7 311 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 CYHR1Q6ZMK1 362 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 CEP128Q6ZU80 1094 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 MCATQ8IVS2 390 aaKnown RBP10.52□□□□□ -0.73
USP49-204ENST00000423567 FAM20CQ8IXL6 584 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 DSELQ8IZU8 1212 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 DNAJC22Q8N4W6 341 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 TTC29Q8NA56 475 aaPredicted RBP10.52□□□□□ -0.73
USP49-204ENST00000423567 OR2L3Q8NG85 312 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 FBXO25Q8TCJ0 367 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 EEF1AKMT1Q8WVE0 214 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 TTC9Q92623 222 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 DLG3Q92796 817 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 CCDC138Q96M89 665 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 MIPEPQ99797 713 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 C17orf62Q9BQA9 187 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 NDC1Q9BTX1 674 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 ACAT2Q9BWD1 397 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 TRIM54Q9BYV2 358 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 SPRTNQ9H040 489 aaPredicted RBP10.52□□□□□ -0.73
USP49-204ENST00000423567 MRPS30Q9NP92 439 aaKnown RBP10.52□□□□□ -0.73
USP49-204ENST00000423567 TXLNGQ9NUQ3 528 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 ABCF3Q9NUQ8 709 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 EURLQ9NYK6 297 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 PCDHGA6Q9Y5G7 932 aa10.52□□□□□ -0.73
USP49-204ENST00000423567 FAM95CA0A1B0GW59 222 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 PRICKLE3O43900 615 aaPredicted RBP10.51□□□□□ -0.73
USP49-204ENST00000423567 CREG1O75629 220 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 ERGP11308 486 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 PSMB5P28074 263 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 SSTR1P30872 391 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 STX2P32856 288 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 GRIA3P42263 894 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 MAGEA4P43358 317 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 CCR10P46092 362 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 GABRA4P48169 554 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 ARSFP54793 590 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 ABATP80404 500 aa10.51□□□□□ -0.73
USP49-204ENST00000423567 SLC7A5Q01650 507 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms