RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MPC1LP0DKB6 136 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 RPL21P46778 160 aaKnown RBP18.29■□□□□ 0.52
SF3A1-202ENST00000411423 CARSP49589 748 aaKnown RBP18.29■□□□□ 0.52
SF3A1-202ENST00000411423 CDKN2DP55273 166 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 SLC9A5Q14940 896 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 FASTKD3Q14CZ7 662 aaKnown RBP18.29■□□□□ 0.52
SF3A1-202ENST00000411423 NCF4Q15080 339 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 COLEC12Q5KU26 742 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 TEDDM1Q5T9Z0 273 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 FRMPD2BQ6IN97 320 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 NEK10Q6ZWH5 1172 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 ASB11Q8WXH4 323 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 INPP5DQ92835 1189 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 CERS2Q96G23 380 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 CFAP36Q96G28 342 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 ZNF285Q96NJ3 590 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 ACAT2Q9BWD1 397 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 SLC7A5P2Q9GIP4 190 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 KLHL42Q9P2K6 505 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 MAN2B2Q9Y2E5 1009 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 KLK4Q9Y5K2 254 aa18.29■□□□□ 0.52
SF3A1-202ENST00000411423 GFYI3L273 518 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 SUV39H1O43463 412 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 SLC28A2O43868 658 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 KLF7O75840 302 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-202ENST00000411423 TTC4O95801 387 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 PDGFAP04085 211 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 SFTPCP11686 197 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 PMS2P54278 862 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 STEAP4Q687X5 459 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 TLDC1Q6P9B6 456 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 ANKMY2Q8IV38 441 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 LRRC56Q8IYG6 542 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-202ENST00000411423 MAGEC3Q8TD91 643 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 RUNDC3BQ96NL0 473 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 CCDC68Q9H2F9 335 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 TLK1Q9UKI8 766 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 ADAMTS6Q9UKP5 1117 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 TP53TG5Q9Y2B4 290 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 SNX24Q9Y343 169 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 AP1M2Q9Y6Q5 423 aa18.28■□□□□ 0.52
SF3A1-202ENST00000411423 TLN1Q9Y490 2541 aaKnown RBP18.27■□□□□ 0.52
SF3A1-202ENST00000411423 LOC105369274A0A096LPK9 316 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 LOC102723532A0A0G2JNH3 316 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 SLC16A8O95907 504 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 CATP04040 527 aaKnown RBP18.27■□□□□ 0.52
SF3A1-202ENST00000411423 HBQ1P09105 142 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 PAFAH1B1P43034 410 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 C2orf54Q08AI8 447 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 TTLL9Q3SXZ7 439 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 FBXO42Q6P3S6 717 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 PRICKLE2Q7Z3G6 844 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 APLFQ8IW19 511 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-202ENST00000411423 OR4N4Q8N0Y3 316 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 C9orf43Q8TAL5 461 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-202ENST00000411423 ZNF480Q8WV37 535 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 EEF1AKMT1Q8WVE0 214 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-202ENST00000411423 SNF8Q96H20 258 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 TRIM4Q9C037 500 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 ENAMQ9NRM1 1142 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 IRAK4Q9NWZ3 460 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 SNX7Q9UNH6 387 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 MRFAP1Q9Y605 127 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 COMMD10Q9Y6G5 202 aa18.27■□□□□ 0.52
SF3A1-202ENST00000411423 OR2A25A4D2G3 310 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 ARGFXA6NJG6 315 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 EFCAB8A8MWE9 144 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 TARM1B6A8C7 271 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 ZIC2O95409 532 aaPredicted RBP18.26■□□□□ 0.51
SF3A1-202ENST00000411423 PNLIPRP1P54315 467 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 HIF1AQ16665 826 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 MLIPQ5VWP3 458 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 MRPL14Q6P1L8 145 aaKnown RBP18.26■□□□□ 0.51
SF3A1-202ENST00000411423 PAQR3Q6TCH7 311 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 COX15Q7KZN9 410 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 RNF44Q7L0R7 432 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 PDIK1LQ8N165 341 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 FBXO15Q8NCQ5 510 aaPredicted RBP18.26■□□□□ 0.51
SF3A1-202ENST00000411423 PROKR1Q8TCW9 393 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 ZUFSPQ96AP4 578 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 NAT9Q9BTE0 207 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 DPH7Q9BTV6 452 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 FAM117AQ9C073 453 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 INTS7Q9NVH2 962 aaKnown RBP18.26■□□□□ 0.51
SF3A1-202ENST00000411423 STOX2Q9P2F5 926 aaPredicted RBP18.26■□□□□ 0.51
SF3A1-202ENST00000411423 RNF14Q9UBS8 474 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 ZC3H7BQ9UGR2 993 aaKnown RBP18.26■□□□□ 0.51
SF3A1-202ENST00000411423 CCDC88CQ9P219 2028 aa18.26■□□□□ 0.51
SF3A1-202ENST00000411423 TENM4Q6N022 2769 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 A0A0J9YVX5 310 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 E7ENX8 843 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 E7ESA3 106 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 RAD51CO43502 376 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 VPS26AO75436 327 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 FKBP9O95302 570 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 TSPAN12O95859 305 aa18.25■□□□□ 0.51
SF3A1-202ENST00000411423 SYF2O95926 243 aaKnown RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 ENO3P13929 434 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-202ENST00000411423 AGXTP21549 392 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms