RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SNX8Q9Y5X2 465 aa13.02□□□□□ -0.32
VPS54-203ENST00000409558 EVPLLA8MZ36 301 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 FPGTO14772 594 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 ATP1B2P14415 290 aaPredicted RBP13.02□□□□□ -0.33
VPS54-203ENST00000409558 ACPPP15309 386 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 ENGP17813 658 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 PSMD8P48556 350 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 TMC5Q6UXY8 1006 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 C1orf52Q8N6N3 182 aaKnown RBP13.02□□□□□ -0.33
VPS54-203ENST00000409558 MAGED4Q96JG8 741 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 ROGDIQ9GZN7 287 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 SGK2Q9HBY8 427 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 TMPRSS11EQ9UL52 423 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 SLC16A8O95907 504 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 FCGR1AP12314 374 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 CDH1P12830 882 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 MATN1P21941 496 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 NNMTP40261 264 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 CRATP43155 626 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 MC1RQ01726 317 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 DAG1Q14118 895 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 C5orf22Q49AR2 442 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 CARD16Q5EG05 197 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 PIWIL3Q7Z3Z3 882 aaKnown RBP13.02□□□□□ -0.33
VPS54-203ENST00000409558 RAVER1Q8IY67 606 aaKnown RBP13.02□□□□□ -0.33
VPS54-203ENST00000409558 RBM38Q9H0Z9 239 aaKnown RBP13.02□□□□□ -0.33
VPS54-203ENST00000409558 OR51B5Q9H339 312 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 ABCG2Q9UNQ0 655 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 BTBD3Q9Y2F9 522 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 PCDHB3Q9Y5E6 796 aa13.02□□□□□ -0.33
VPS54-203ENST00000409558 CNTRLQ7Z7A1 2325 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 SLC28A1O00337 649 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 GREM1O60565 184 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 LAMP1P11279 417 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 SYN1P17600 705 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 POLR2EP19388 210 aaKnown RBP13.01□□□□□ -0.33
VPS54-203ENST00000409558 KIR3DL1P43629 444 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 C8orf59Q8N0T1 100 aaPredicted RBP13.01□□□□□ -0.33
VPS54-203ENST00000409558 EZH1Q92800 747 aaPredicted RBP13.01□□□□□ -0.33
VPS54-203ENST00000409558 CXXC1Q9P0U4 656 aaPredicted RBP13.01□□□□□ -0.33
VPS54-203ENST00000409558 C5AR2Q9P296 337 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 MAGEB17A8MXT2 336 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 K7ESM1 405 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 KLK8O60259 260 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 GGT1P19440 569 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 MAP2K4P45985 399 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 SPINT3P49223 89 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 CATSPEREQ5SY80 951 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 TMEM215Q68D42 235 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 GDPD4Q6W3E5 623 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 ZDHHC21Q8IVQ6 265 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 AP2M1Q96CW1 435 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 SAMD11Q96NU1 681 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 OR2AG1Q9H205 316 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 ANKRD28O15084 1053 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 ELFN1P0C7U0 828 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 EPORP19235 508 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 HTR1EP28566 365 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 ALDH9A1P49189 494 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 HORMAD1Q86X24 394 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 PROSER1Q86XN7 944 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 TMEM132CQ8N3T6 1108 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 PDPRQ8NCN5 879 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 ZFAND2BQ8WV99 257 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 TMEM98Q9Y2Y6 226 aa13.01□□□□□ -0.33
VPS54-203ENST00000409558 MGAT4DA6NG13 374 aa13□□□□□ -0.33
VPS54-203ENST00000409558 EPCAMP16422 314 aa13□□□□□ -0.33
VPS54-203ENST00000409558 ZNF284Q2VY69 593 aa13□□□□□ -0.33
VPS54-203ENST00000409558 FRG2Q64ET8 278 aa13□□□□□ -0.33
VPS54-203ENST00000409558 C16orf87Q6PH81 154 aa13□□□□□ -0.33
VPS54-203ENST00000409558 PATL1Q86TB9 770 aaKnown RBP13□□□□□ -0.33
VPS54-203ENST00000409558 MICU2Q8IYU8 434 aa13□□□□□ -0.33
VPS54-203ENST00000409558 ZNF740Q8NDX6 193 aa13□□□□□ -0.33
VPS54-203ENST00000409558 FRG2BQ96QU4 278 aa13□□□□□ -0.33
VPS54-203ENST00000409558 NPLQ9BXD5 320 aaPredicted RBP13□□□□□ -0.33
VPS54-203ENST00000409558 UGT2B28Q9BY64 529 aa13□□□□□ -0.33
VPS54-203ENST00000409558 DNAJC11Q9NVH1 559 aa13□□□□□ -0.33
VPS54-203ENST00000409558 VNN3Q9NY84 501 aa13□□□□□ -0.33
VPS54-203ENST00000409558 SNX6Q9UNH7 406 aa13□□□□□ -0.33
VPS54-203ENST00000409558 TESMINQ9Y4I5 508 aa13□□□□□ -0.33
VPS54-203ENST00000409558 ORC6Q9Y5N6 252 aa13□□□□□ -0.33
VPS54-203ENST00000409558 CLIC1O00299 241 aa13□□□□□ -0.33
VPS54-203ENST00000409558 AP1G1O43747 822 aa13□□□□□ -0.33
VPS54-203ENST00000409558 CYP2A7P20853 494 aa13□□□□□ -0.33
VPS54-203ENST00000409558 PSMB9P28065 219 aa13□□□□□ -0.33
VPS54-203ENST00000409558 CTNNB1P35222 781 aa13□□□□□ -0.33
VPS54-203ENST00000409558 PHEXP78562 749 aa13□□□□□ -0.33
VPS54-203ENST00000409558 ADCK2Q7Z695 626 aa13□□□□□ -0.33
VPS54-203ENST00000409558 PLD3Q8IV08 490 aa13□□□□□ -0.33
VPS54-203ENST00000409558 EID3Q8N140 333 aa13□□□□□ -0.33
VPS54-203ENST00000409558 SMYD1Q8NB12 490 aa13□□□□□ -0.33
VPS54-203ENST00000409558 HEBP1Q9NRV9 189 aa13□□□□□ -0.33
VPS54-203ENST00000409558 ETAA1Q9NY74 926 aa13□□□□□ -0.33
VPS54-203ENST00000409558 REV3LO60673 3130 aa13□□□□□ -0.33
VPS54-203ENST00000409558 CFAP99D6REC4 459 aa13□□□□□ -0.33
VPS54-203ENST00000409558 H7C0S8 307 aa13□□□□□ -0.33
VPS54-203ENST00000409558 ETHE1O95571 254 aa13□□□□□ -0.33
VPS54-203ENST00000409558 POP4O95707 220 aaKnown RBP13□□□□□ -0.33
VPS54-203ENST00000409558 IRS1P35568 1242 aa13□□□□□ -0.33
VPS54-203ENST00000409558 WDR5P61964 334 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms