RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 RPSAP08865 295 aaKnown RBP18.37■□□□□ 0.53
USP39-202ENST00000409025 ACPPP15309 386 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 PNLIPRP1P54315 467 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 ADPRHP54922 357 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 MRPS21P82921 87 aaKnown RBP18.37■□□□□ 0.53
USP39-202ENST00000409025 BNIP2Q12982 314 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 TSTA3Q13630 321 aaPredicted RBP18.37■□□□□ 0.53
USP39-202ENST00000409025 METRNLQ641Q3 311 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 DHFR2Q86XF0 187 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 SPDYE1Q8NFV5 336 aaPredicted RBP18.37■□□□□ 0.53
USP39-202ENST00000409025 RAD51AP1Q96B01 352 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 NAF1Q96HR8 494 aaKnown RBP18.37■□□□□ 0.53
USP39-202ENST00000409025 LRGUKQ96M69 825 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 SGPP1Q9BX95 441 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 CLMPQ9H6B4 373 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 PCDHGA11Q9Y5H2 935 aa18.37■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3DA0A087WVF3 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3IA0A087WXS9 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3EA0A087X179 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3KA0A087X1G2 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3FA6NER0 549 aaPredicted RBP18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3LB9A6J9 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 H3BQ06 376 aaPredicted RBP18.36■□□□□ 0.53
USP39-202ENST00000409025 C8BP07358 591 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3HP0C7X1 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 MYCLP1P12525 358 aaPredicted RBP18.36■□□□□ 0.53
USP39-202ENST00000409025 HSD3B1P14060 373 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 AMD1P17707 334 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 KELP23276 732 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 HSD3B2P26439 372 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 CLDN8P56748 225 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 ADGRE1Q14246 886 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 FAM174BQ3ZCQ3 159 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 CMPK2Q5EBM0 449 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3GQ6DHY5 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3CQ6IPX1 549 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 SLCO4C1Q6ZQN7 724 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 HORMAD1Q86X24 394 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 HID1Q8IV36 788 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 DCUN1D3Q8IWE4 304 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TBC1D3Q8IZP1 549 aaPredicted RBP18.36■□□□□ 0.53
USP39-202ENST00000409025 PQLC1Q8N2U9 271 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 SLC13A3Q8WWT9 602 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TFGQ92734 400 aaPredicted RBP18.36■□□□□ 0.53
USP39-202ENST00000409025 DNASE1L2Q92874 299 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 NEIL2Q969S2 332 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 SIPA1Q96FS4 1042 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 APIPQ96GX9 242 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 ZNF570Q96NI8 536 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 PREBQ9HCU5 417 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 TM7SF3Q9NS93 570 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 SLAMF8Q9P0V8 285 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 NCKAP1Q9Y2A7 1128 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 DLGAP4Q9Y2H0 992 aa18.36■□□□□ 0.53
USP39-202ENST00000409025 RPN2P04844 631 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 ACADSP16219 412 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 NPPBP16860 134 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 POU3F3P20264 500 aaPredicted RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 ATP6V1C1P21283 382 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 CLNS1AP54105 237 aaKnown RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 EEFSECP57772 596 aaKnown RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 RHDQ02161 417 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 TAP2Q03519 686 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 PWP1Q13610 501 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 E2F2Q14209 437 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 NANOGP8Q6NSW7 305 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 TMPRSS11BQ86T26 416 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 KIAA2013Q8IYS2 634 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 SLC44A3Q8N4M1 653 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 KRTCAP2Q8N6L1 136 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 PHC3Q8NDX5 983 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 CLHC1Q8NHS4 586 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 NUDT8Q8WV74 236 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 TRIM15Q9C019 465 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 NANOGQ9H9S0 305 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 BRF2Q9HAW0 419 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 CCDC177Q9NQR7 707 aaPredicted RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 GMPR2Q9P2T1 348 aaKnown RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 VPS29Q9UBQ0 182 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 FZD4Q9ULV1 537 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 DNAJA2O60884 412 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 KCNH1O95259 989 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 DDX39BQ13838 428 aaKnown RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 RABL3Q5HYI8 236 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 DLEU7Q6UYE1 221 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 LRRC56Q8IYG6 542 aaPredicted RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 RNF175Q8N4F7 328 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 OR5AR1Q8NGP9 310 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 ZUFSPQ96AP4 578 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 REPS1Q96D71 796 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 APOLD1Q96LR9 279 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 MTERF1Q99551 399 aaKnown RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 ZNF184Q99676 751 aaPredicted RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 KCNK12Q9HB15 430 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 PRM3Q9NNZ6 103 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 SPATA6Q9NWH7 488 aaPredicted RBP18.35■□□□□ 0.53
USP39-202ENST00000409025 LIMD1Q9UGP4 676 aa18.35■□□□□ 0.53
USP39-202ENST00000409025 CASQ2O14958 399 aaPredicted RBP18.34■□□□□ 0.53
USP39-202ENST00000409025 PI15O43692 258 aa18.34■□□□□ 0.53
USP39-202ENST00000409025 PGRP06401 933 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms