RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PRPF18Q99633 342 aaKnown RBP10.02□□□□□ -0.8
COL6A3-205ENST00000392004 NLNQ9BYT8 704 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 EVA1BQ9NVM1 165 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 C6orf203Q9P0P8 240 aaPredicted RBP10.02□□□□□ -0.8
COL6A3-205ENST00000392004 POMPQ9Y244 141 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 LOXHD1Q8IVV2 1947 aa10.02□□□□□ -0.8
COL6A3-205ENST00000392004 TDRD15B5MCY1 1934 aaKnown RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF487B1APH4 448 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 PATE3B3GLJ2 98 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 PEX1O43933 1283 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 FKBP9O95302 570 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 FAM58BPP0C7Q3 252 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 GRK2P25098 689 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 CHI3L1P36222 383 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 CCNIQ14094 377 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 NADK2Q4G0N4 442 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 FKBP9P1Q75LS8 142 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 CUZD1Q86UP6 607 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 HPS6Q86YV9 775 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 VPS37AQ8NEZ2 397 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 FBXO30Q8TB52 745 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ISG20Q96AZ6 181 aaKnown RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 KCNA7Q96RP8 456 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 S1PR5Q9H228 398 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 RUBCNLQ9H714 662 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 CAAP1Q9H8G2 361 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 INTS10Q9NVR2 710 aaKnown RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 COPG2Q9UBF2 871 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 WNT16Q9UBV4 365 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF180Q9UJW8 692 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ANKRD6Q9Y2G4 727 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ZSCAN9O15535 394 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ATP6V1G1O75348 118 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 GSNP06396 782 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 EPORP19235 508 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ABCE1P61221 599 aaKnown RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 MSLNQ13421 630 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 SLBPQ14493 270 aaKnown RBP eCLIP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 KIAA1161Q6NSJ0 714 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 PQLC1Q8N2U9 271 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 FBXW8Q8N3Y1 598 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 GALNT4Q8N4A0 578 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 RASGEF1AQ8N9B8 481 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 TMIEQ8NEW7 156 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 OR13J1Q8NGT2 312 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 PNPT1Q8TCS8 783 aaKnown RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 MAPK15Q8TD08 544 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ACTRT2Q8TDY3 377 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ZDHHC1Q8WTX9 485 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ANKRD49Q8WVL7 239 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 NSUN5Q96P11 429 aaKnown RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 AIF1LQ9BQI0 150 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 OR51B5Q9H339 312 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 STARD5Q9NSY2 213 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 DUSP12Q9UNI6 340 aa10.02□□□□□ -0.81
COL6A3-205ENST00000392004 POLR3HQ9Y535 204 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-205ENST00000392004 ZCWPW2A0A1B0GU75 182 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 A0A1W2PPC1 479 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 FEZF1A0PJY2 475 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 CMPK1P30085 196 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 HSPA13P48723 471 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 CCR4P51679 360 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 CLCQ05315 142 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 KIAA0895LQ68EN5 471 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 SLC36A4Q6YBV0 504 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 TMEM135Q86UB9 458 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 ANKRD46Q86W74 232 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 EXOSC8Q96B26 276 aaKnown RBP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 HCN2Q9UL51 889 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 PAIP2BQ9ULR5 123 aaKnown RBP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 CACNA1AO00555 2505 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 AZIN1O14977 448 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 PLIN3O60664 434 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 B4GALT2O60909 372 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 SLC16A8O95907 504 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 OTCP00480 354 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 PRLP01236 227 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 HPGDP15428 266 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 CRHR1P34998 444 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 AFF3P51826 1226 aaKnown RBP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 TGM3Q08188 693 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 BNIP3Q12983 259 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 TP53BP2Q13625 1128 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 PCBP2Q15366 365 aaKnown RBP eCLIP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 NKAIN2Q5VXU1 208 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 UGT2A3Q6UWM9 527 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF554Q86TJ5 538 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 C1orf210Q8IVY1 113 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 FBXO15Q8NCQ5 510 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-205ENST00000392004 WDR48Q8TAF3 677 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 C2orf42Q9NWW7 574 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 AHSPQ9NZD4 102 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 TRAF6Q9Y4K3 522 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 AP4B1Q9Y6B7 739 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 ZNF839A8K0R7 811 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 K7EQS6 105 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 NPC1O15118 1278 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 NDUFS4O43181 175 aa10.01□□□□□ -0.81
COL6A3-205ENST00000392004 SYPP08247 313 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms