RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 TMPRSS11FQ6ZWK6 438 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ERN2Q76MJ5 926 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ADCK2Q7Z695 626 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 METTL23Q86XA0 190 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 OR8H3Q8N146 312 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 TMEM178AQ8NBL3 297 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 PAPD5Q8NDF8 572 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 GOT1L1Q8NHS2 421 aaPredicted RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 FAM222BQ8WU58 562 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ATP6V1E2Q96A05 226 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 SFXN2Q96NB2 322 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 RAB3IPQ96QF0 476 aaPredicted RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 SEPHS2Q99611 448 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 MYNNQ9NPC7 610 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ZDHHC18Q9NUE0 388 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 CHCHD3Q9NX63 227 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 LIPGQ9Y5X9 500 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 IGLV9-49A0A0B4J1Y8 123 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 HYKKA2RU49 373 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 TMEM221A6NGB7 291 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 OR10H2O60403 315 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 RPN1P04843 607 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 MPZP25189 248 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 TLX1P31314 330 aaPredicted RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 PRKCIP41743 596 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 MTHFRP42898 656 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 SLC9A3P48764 834 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 CSRP3P50461 194 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 MZT1Q08AG7 82 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 HNRNPDQ14103 355 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF273Q14593 569 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 RRS1Q15050 365 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 P2RY6Q15077 328 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF239Q16600 458 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 DCAF10Q5QP82 559 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 DET1Q7L5Y6 550 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 GLRX5Q86SX6 157 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 IQUBQ8NA54 791 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 MOSPD2Q8NHP6 518 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 SETD6Q8TBK2 473 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ROBO4Q8WZ75 1007 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 LMF2Q9BU23 707 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 THUMPD3Q9BV44 507 aaKnown RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 LAT2Q9GZY6 243 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ALDH8A1Q9H2A2 487 aaPredicted RBP1.93□□□□□ -2.1
VPS13A-206ENST00000376646 ZWILCHQ9H900 591 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 RIPK3Q9Y572 518 aa1.93□□□□□ -2.1
VPS13A-206ENST00000376646 TRAV34A0A0B4J273 112 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 E9PQ18 207 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 ACSL3O95573 720 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 CLDN1O95832 211 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 EML2O95834 649 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 ATP5BP06576 529 aaKnown RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 H1F0P07305 194 aaKnown RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 RAB40ALP0C0E4 278 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 SMIM18P0DKX4 95 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 PDGFRAP16234 1089 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 PTPN3P26045 913 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 TNNT3P45378 269 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 MAPK12P53778 367 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 POLR2LP62875 67 aaKnown RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 KCNJ10P78508 379 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 RBP5P82980 135 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 MDH1BQ5I0G3 518 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 PET117Q6UWS5 81 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 TMPRSS11BQ86T26 416 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 COMMD2Q86X83 199 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 ARHGAP24Q8N264 748 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 BMPERQ8N8U9 685 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 L3MBTL4Q8NA19 623 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 OR2T11Q8NH01 316 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 RNF128Q8TEB7 428 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 DEPDC1BQ8WUY9 529 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 SYN2Q92777 582 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 EXT2Q93063 718 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 SPSB1Q96BD6 273 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 OTUB1Q96FW1 271 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 JAKMIP1Q96N16 626 aaKnown RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 MGME1Q9BQP7 344 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 DESI2Q9BSY9 194 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 MCRIP2Q9BUT9 160 aaKnown RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 KATNB1Q9BVA0 655 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 ACKR4Q9NPB9 350 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 OLFML3Q9NRN5 406 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 INTS9Q9NV88 658 aaKnown RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 COQ3Q9NZJ6 369 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 STK26Q9P289 416 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 GTF3C4Q9UKN8 822 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 GRIP1Q9Y3R0 1128 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 POMT1Q9Y6A1 747 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 PCNX3Q9H6A9 2034 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 GIMAP1-GIMAP5A0A087WTJ2 511 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 A0A087WW49 117 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 A0A1W2PPQ1 181 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 MED19A0JLT2 244 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 PTGESO14684 152 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 CDC123O75794 336 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 CRKLP46109 303 aaKnown RBP1.92□□□□□ -2.1
VPS13A-206ENST00000376646 CAPZA1P52907 286 aa1.92□□□□□ -2.1
VPS13A-206ENST00000376646 DMPKQ09013 629 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms