RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 NR4A2P43354 598 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 NKX2-5P52952 324 aaPredicted RBP20.59■□□□□ 0.89
UPF3A-202ENST00000375299 CLDN8P56748 225 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 CREMQ03060 361 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 GNASQ5JWF2 1037 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 USP43Q70EL4 1123 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 ATG16L2Q8NAA4 619 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 USP7Q93009 1102 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 B3GALT6Q96L58 329 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 IL37Q9NZH6 218 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 AGO1Q9UL18 857 aaKnown RBP20.59■□□□□ 0.89
UPF3A-202ENST00000375299 RNF6Q9Y252 685 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 MN1Q10571 1320 aaPredicted RBP20.59■□□□□ 0.89
UPF3A-202ENST00000375299 A0A0U1RQS6 177 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 PCDHGA12O60330 932 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 TSPAN3O60637 253 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 IGHA2P01877 340 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 SEMG1P04279 462 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 RING1Q06587 406 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 MGAT3Q09327 533 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 SLC14A1Q13336 389 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 NFE2Q16621 373 aaPredicted RBP20.59■□□□□ 0.89
UPF3A-202ENST00000375299 TTLL9Q3SXZ7 439 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 TPRG1LQ5T0D9 272 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 FAM171A1Q5VUB5 890 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 DESI1Q6ICB0 168 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 DOK6Q6PKX4 331 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 SLC22A15Q8IZD6 547 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 Q8N9G6 341 aaPredicted RBP20.59■□□□□ 0.89
UPF3A-202ENST00000375299 CHAC2Q8WUX2 184 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 DNASE1L2Q92874 299 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 NTMT1Q9BV86 223 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 APOL5Q9BWW9 433 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 PARVBQ9HBI1 364 aa20.59■□□□□ 0.89
UPF3A-202ENST00000375299 SAMHD1Q9Y3Z3 626 aaKnown RBP20.59■□□□□ 0.89
UPF3A-202ENST00000375299 LOC730098B7Z3J9 87 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 M0R082 166 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 PGLSO95336 258 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 B3GALT4O96024 378 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 CD52P31358 61 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 BMPR1AP36894 532 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 CTSKP43235 329 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 RPP38P78345 283 aaKnown RBP20.58■□□□□ 0.89
UPF3A-202ENST00000375299 ZNF45Q02386 682 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 CACNG1Q06432 222 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 PRSS36Q5K4E3 855 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 PTRHD1Q6GMV3 140 aaKnown RBP20.58■□□□□ 0.89
UPF3A-202ENST00000375299 SERINC5Q86VE9 423 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 MMAAQ8IVH4 418 aaKnown RBP20.58■□□□□ 0.89
UPF3A-202ENST00000375299 ENTHD1Q8IYW4 607 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 CLIP4Q8N3C7 705 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 C2orf69Q8N8R5 385 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 ULK4Q96C45 1275 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 ADGRE3Q9BY15 652 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 NXF2Q9GZY0 626 aaKnown RBP20.58■□□□□ 0.89
UPF3A-202ENST00000375299 TLR8Q9NR97 1041 aaKnown RBP20.58■□□□□ 0.89
UPF3A-202ENST00000375299 PADI3Q9ULW8 664 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP20.58■□□□□ 0.89
UPF3A-202ENST00000375299 DLGAP4Q9Y2H0 992 aa20.58■□□□□ 0.89
UPF3A-202ENST00000375299 KDELR3O43731 214 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 DBTP11182 482 aaKnown RBP20.58■□□□□ 0.88
UPF3A-202ENST00000375299 ITGB6P18564 788 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 GADD45AP24522 165 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 GTF2E2P29084 291 aaKnown RBP20.58■□□□□ 0.88
UPF3A-202ENST00000375299 RGS4P49798 205 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 CSNK2BP67870 215 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 VLDLRP98155 873 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 NPRL3Q12980 569 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 TTC9BQ8N6N2 239 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 AMER2Q8N7J2 671 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 CLSTN3Q9BQT9 956 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 COPS4Q9BT78 406 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 CIPCQ9C0C6 399 aa20.58■□□□□ 0.88
UPF3A-202ENST00000375299 A0A0U1RQF3 1178 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 F11P03951 625 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 AKR1A1P14550 325 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 TAF10Q12962 218 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 C5orf22Q49AR2 442 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 SERPINA11Q86U17 422 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 UBTD2Q8WUN7 234 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 CCDC97Q96F63 343 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-202ENST00000375299 AASDHPPTQ9NRN7 309 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 GPRC5BQ9NZH0 403 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 RPS6KA6Q9UK32 745 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 PCDHB5Q9Y5E4 795 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 ILVBLA1L0T0 632 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 E9PQ18 207 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 RGS13O14921 159 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 DSCR3O14972 297 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 DUSP11O75319 330 aaKnown RBP20.57■□□□□ 0.88
UPF3A-202ENST00000375299 SLC6A4P31645 630 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 PRKCDQ05655 676 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 TBCEQ15813 527 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-202ENST00000375299 FAHD1Q6P587 224 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 PGBD3Q8N328 593 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 METTL4Q8N3J2 472 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 PARP16Q8N5Y8 322 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 TRPV1Q8NER1 839 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 LKAAEAR1Q8TD35 194 aa20.57■□□□□ 0.88
UPF3A-202ENST00000375299 MTFMTQ96DP5 389 aaKnown RBP20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms