RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 FTH1P02794 183 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 IST1P53990 364 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 ZBED5Q49AG3 693 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 TMEM259Q4ZIN3 620 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 NOXRED1Q6NXP6 359 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 GPR141Q7Z602 305 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 CLEC4FQ8N1N0 589 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 RNF217Q8TC41 542 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 NETO1Q8TDF5 533 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 FAM120BQ96EK7 910 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 PAWRQ96IZ0 340 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 MUS81Q96NY9 551 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 YTHDF1Q9BYJ9 559 aaKnown RBP20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 GPRC5BQ9NZH0 403 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 FAM8A1Q9UBU6 413 aa20.24■□□□□ 0.83
CCDC88B-203ENST00000359902 ZBBXA8MT70 800 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 THRBP10828 461 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 ACPPP15309 386 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 CD22P20273 847 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 ESRRGP62508 458 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 ABRQ12979 859 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 TIFAQ96CG3 184 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 ZSWIM3Q96MP5 696 aa20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 NPLQ9BXD5 320 aaPredicted RBP20.23■□□□□ 0.83
CCDC88B-203ENST00000359902 ARHGEF33A8MVX0 844 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 GSTM1P09488 218 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 PCSK2P16519 638 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 SYN1P17600 705 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 GSTM4Q03013 218 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 CCNYL2Q5T2Q4 361 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 LIPJQ5W064 366 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 GPR180Q86V85 440 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 BTN2A2Q8WVV5 523 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 GFM2Q969S9 779 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 NCLNQ969V3 563 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 FCRL1Q96LA6 429 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 MAGEB10Q96LZ2 347 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 ZSCAN5AQ9BUG6 496 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 NFKBIL1Q9UBC1 381 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 MTCL1Q9Y4B5 1905 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 A0A1B0GVG6 124 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 PSIP1O75475 530 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 HPRP00739 348 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 MYCLP1P12525 358 aaPredicted RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 NTHL1P78549 312 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 IRF8Q02556 426 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 LAPTM5Q13571 262 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 KCNC3Q14003 757 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 FKBP9P1Q75LS8 142 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 TECPR1Q7Z6L1 1165 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 ERI1Q8IV48 349 aaKnown RBP20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 FAM83CQ9BQN1 747 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 IL36AQ9UHA7 158 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 PLXNA2O75051 1894 aa20.22■□□□□ 0.83
CCDC88B-203ENST00000359902 WNT9AO14904 365 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 PER2O15055 1255 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 WEE1P30291 646 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 NNMTP40261 264 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 OR4F3Q6IEY1 312 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 THOC6Q86W42 341 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 RAVER1Q8IY67 606 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 RASGEF1AQ8N9B8 481 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 CSGALNACT1Q8TDX6 532 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 LIN28AQ9H9Z2 209 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 SMURF2Q9HAU4 748 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 RAD18Q9NS91 495 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 RFXANKO14593 260 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 TSPAN6O43657 245 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 UGDHO60701 494 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 SERPINA1P01009 418 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 MAP4P27816 1152 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 CTSCP53634 463 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 POM121L1PQ3SYA9 428 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 ZNF805Q5CZA5 627 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 DPPA4Q7L190 304 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 ZNF551Q7Z340 670 aaPredicted RBP20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 HS3ST5Q8IZT8 346 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 REXO5Q96IC2 774 aaKnown RBP20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 OSBPL10Q9BXB5 764 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 EBPLQ9BY08 206 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 C11orf49Q9H6J7 331 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 MAGIXQ9H6Y5 334 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 MARK1Q9P0L2 795 aa20.21■□□□□ 0.83
CCDC88B-203ENST00000359902 PRPS1L1P21108 318 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 SHMT2P34897 504 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 KIR3DL1P43629 444 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 YAP1P46937 504 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 ABHD18Q0P651 414 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 MTAPQ13126 283 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 XKR6Q5GH73 641 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 MSANTD1Q6ZTZ1 278 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 LILRA3Q8N6C8 439 aaPredicted RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 WDR20Q8TBZ3 569 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 FOXJ1Q92949 421 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 SDCCAG3Q96C92 435 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 RDH12Q96NR8 316 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 TOR3AQ9H497 397 aa20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 THG1LQ9NWX6 298 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-203ENST00000359902 INSL6Q9Y581 213 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms