RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MAGP20916 626 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 ACADLP28330 430 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 HOXA6P31267 233 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 GTF2H2Q13888 395 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 LRP8Q14114 963 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 PPP1R3AQ16821 1122 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 SWT1Q5T5J6 900 aaKnown RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 GTF2H2CQ6P1K8 395 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 GALNT7Q86SF2 657 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 AMIGO1Q86WK6 493 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 DENND1AQ8TEH3 1009 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 NEIL2Q969S2 332 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 APOLD1Q96LR9 279 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 RILPQ96NA2 401 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 TMEM79Q9BSE2 394 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 SLC12A9Q9BXP2 914 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 CCDC134Q9H6E4 229 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 RMI1Q9H9A7 625 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 FARSBQ9NSD9 589 aaKnown RBP8.92□□□□□ -0.98
USP4-202ENST00000351842 TMEM9Q9P0T7 183 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 DGKBQ9Y6T7 804 aa8.92□□□□□ -0.98
USP4-202ENST00000351842 A0A0J9YVX5 310 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 LMO7DNF2Z398 122 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 JUNP05412 331 aaKnown RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 SYPP08247 313 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 EPB42P16452 691 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 EPHA8P29322 1005 aaPredicted RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 CCT8P50990 548 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 PNLIPRP1P54315 467 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 CLCQ05315 142 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 CHIT1Q13231 466 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 KCNAB1Q14722 419 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 SHBQ15464 509 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 GALNTL6Q49A17 601 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 SPDYAQ5MJ70 313 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 GOLGA7Q7Z5G4 137 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 THOC6Q86W42 341 aaKnown RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 METTL6Q8TCB7 284 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 GPBAR1Q8TDU6 330 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 CCT8L2Q96SF2 557 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 STN1Q9H668 368 aaKnown RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 WDR55Q9H6Y2 383 aaPredicted RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 CNOT10Q9H9A5 744 aaKnown RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 CCDC177Q9NQR7 707 aaPredicted RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 KCNK4Q9NYG8 393 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 OARD1Q9Y530 152 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 SPTA1P02549 2419 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 C17orf113A0A1B0GUU1 675 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 PIPSLA2A3N6 862 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 E7ENX8 843 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 MATN4O95460 622 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 LMNAP02545 664 aaKnown RBP8.91□□□□□ -0.98
USP4-202ENST00000351842 LINC00032P0C843 101 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 COL6A2P12110 1019 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 CDH3P22223 829 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 TAP2Q03519 686 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 PRKAA1Q13131 559 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 RASA2Q15283 850 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 UNC50Q53HI1 259 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 MILR1Q7Z6M3 343 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 OXR1Q8N573 874 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 GPR156Q8NFN8 814 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 SLC40A1Q9NP59 571 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 PARD6AQ9NPB6 346 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 ZDHHC2Q9UIJ5 367 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 ICKQ9UPZ9 632 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 ACTL7BQ9Y614 415 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 RNF215Q9Y6U7 377 aa8.91□□□□□ -0.98
USP4-202ENST00000351842 PIEZO2Q9H5I5 2752 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 UBFD1O14562 309 aaKnown RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 B3GALT4O96024 378 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 RPN2P04844 631 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 HMOX2P30519 316 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 CNR2P34972 360 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 HERVK_113P63132 956 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 SH3BP2P78314 561 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 HMGCS1Q01581 520 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 LACTB2Q53H82 288 aaPredicted RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 PHF19Q5T6S3 580 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 MAMSTRQ6ZN01 415 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 SFRP1Q8N474 314 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 METTL27Q8N6F8 245 aaPredicted RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 N4BP2L2Q92802 583 aaPredicted RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 CCDC74AQ96AQ1 378 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 LINC00615Q96LM1 132 aaPredicted RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 NUDT22Q9BRQ3 303 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 ERVK-6Q9BXR3 956 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 PADI4Q9UM07 663 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 NDUFAB1O14561 156 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 PSIP1O75475 530 aaKnown RBP8.9□□□□□ -0.98
USP4-202ENST00000351842 SERPINE1P05121 402 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 CAPN1P07384 714 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 CBSLP0DN79 551 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 EPHA3P29320 983 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 CBSP35520 551 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 NUDT1P36639 197 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 RAB28P51157 221 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 CBLBQ13191 982 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 ZNF678Q5SXM1 525 aa8.9□□□□□ -0.98
USP4-202ENST00000351842 PRAMEF13Q5VWM6 474 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms