RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 OR4F6Q8NGB9 312 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 OR4L1Q8NH43 312 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 CLHC1Q8NHS4 586 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SETD6Q8TBK2 473 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 PPP1R13LQ8WUF5 828 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ASB15Q8WXK1 588 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SNAPC3Q92966 411 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 NACC2Q96BF6 587 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 TADA1Q96BN2 335 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 FAM120BQ96EK7 910 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 NECTIN4Q96NY8 510 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ZNF717Q9BY31 904 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 MKRN2Q9H000 416 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 CATSPERBQ9H7T0 1116 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 QTRT2Q9H974 415 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 AGO3Q9H9G7 860 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 SYTL2Q9HCH5 934 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 IL1RAPQ9NPH3 570 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SERHLQ9NQF3 203 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 GPR83Q9NYM4 423 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 PCDHB5Q9Y5E4 795 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 PAPPA2Q9BXP8 1791 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 KDM4FA0A1W2PPD8 638 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 A0A1W2PQ09 198 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 AGRPO00253 132 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 STK25O00506 426 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 IRAK2O43187 625 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 HOXB9P17482 250 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 OGNP20774 298 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 PTPN6P29350 595 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 CDKN1CP49918 316 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 CYP4F2P78329 520 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 CD83Q01151 205 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 HYAL2Q12891 473 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 GALNT3Q14435 633 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 TAB1Q15750 504 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 DDR2Q16832 855 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 TRAF7Q6Q0C0 670 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SUSD1Q6UWL2 747 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 HORMAD1Q86X24 394 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 NIM1KQ8IY84 436 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 LIX1Q8N485 282 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 LSMEM1Q8N8F7 131 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ATG16L2Q8NAA4 619 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SIDT2Q8NBJ9 832 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 GPR151Q8TDV0 419 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 EEF1AKMT1Q8WVE0 214 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 HMCESQ96FZ2 354 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 HRASLS5Q96KN8 279 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 KCNC2Q96PR1 638 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 INPP5KQ9BT40 448 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 BARHL1Q9BZE3 327 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SMURF1Q9HCE7 757 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ATP13A2Q9NQ11 1180 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 ASAH2Q9NR71 780 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 FARSBQ9NSD9 589 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 MIOSQ9NXC5 875 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 TAS2R13Q9NYV9 303 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 STMN3Q9NZ72 180 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 CD274Q9NZQ7 290 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 UBA2Q9UBT2 640 aaPredicted RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 KCNN3Q9UGI6 736 aa6.62□□□□□ -1.35
VPS39-202ENST00000348544 SAMHD1Q9Y3Z3 626 aaKnown RBP6.62□□□□□ -1.35
VPS39-202ENST00000348544 CLCA1A8K7I4 914 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 E9PAM4 449 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 POLR1CO15160 346 aaPredicted RBP6.61□□□□□ -1.35
VPS39-202ENST00000348544 NIPSNAP2O75323 286 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 MOCS2O96007 188 aaPredicted RBP6.61□□□□□ -1.35
VPS39-202ENST00000348544 KCNE1P15382 129 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 CDKN2CP42773 168 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 RPS5P46782 204 aaKnown RBP6.61□□□□□ -1.35
VPS39-202ENST00000348544 ZNF280AP59817 542 aaPredicted RBP6.61□□□□□ -1.35
VPS39-202ENST00000348544 HMGCS1Q01581 520 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 TRIM71Q2Q1W2 868 aaKnown RBP6.61□□□□□ -1.35
VPS39-202ENST00000348544 XKR4Q5GH76 650 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ARMC4Q5T2S8 1044 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 NOTUMQ6P988 496 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 C19orf48Q6RUI8 117 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 GOLGA7Q7Z5G4 137 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ATCAYQ86WG3 371 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 GPSM1Q86YR5 675 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ZFAND1Q8TCF1 268 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 COQ8BQ96D53 544 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 OR5M11Q96RB7 305 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 OR52E6Q96RD3 313 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 ZBTB18Q99592 522 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 RAD9AQ99638 391 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 OSMRQ99650 979 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 COQ7Q99807 217 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 C16orf70Q9BSU1 422 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 GON7Q9BXV9 100 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 DPY30Q9C005 99 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 CLMPQ9H6B4 373 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 NARFLQ9H6Q4 476 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 RAD18Q9NS91 495 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 PLCXD1Q9NUJ7 323 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 TMEM39AQ9NV64 488 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 KIF17Q9P2E2 1029 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 SATB2Q9UPW6 733 aa6.61□□□□□ -1.35
VPS39-202ENST00000348544 KLHL20Q9Y2M5 609 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms