RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TMED4Q7Z7H5 227 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 ZNF280BQ86YH2 543 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 MARCH9Q86YJ5 346 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 PLCZ1Q86YW0 608 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 RGL4Q8IZJ4 473 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TOP6BLQ8N6T0 577 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 SLC37A3Q8NCC5 494 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 OR4F6Q8NGB9 312 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 RAB8BQ92930 207 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 UBE2E3Q969T4 207 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 TMCO6Q96DC7 493 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 RIPOR3Q96MK2 946 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 CDK5RAP1Q96SZ6 601 aaKnown RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 RNF208Q9H0X6 261 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 ZCCHC3Q9NUD5 404 aaKnown RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 KCTD5Q9NXV2 234 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 GTF2IRD1Q9UHL9 959 aa8.5□□□□□ -1.05
RTN3-202ENST00000339997 MRPS23Q9Y3D9 190 aaKnown RBP8.5□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3DA0A087WVF3 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3IA0A087WXS9 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3EA0A087X179 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3KA0A087X1G2 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3FA6NER0 549 aaPredicted RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 GLOD5A6NK44 160 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 AQP12BA6NM10 295 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 LOC730098B7Z3J9 87 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3LB9A6J9 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3HP0C7X1 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 RORCP51449 518 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ARF3P61204 181 aaPredicted RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 NCS1P62166 190 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ARF1P84077 181 aaKnown RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 TUSC3Q13454 348 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 MINDY4Q4G0A6 757 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3GQ6DHY5 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3CQ6IPX1 549 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 PRSS55Q6UWB4 352 aaPredicted RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 BEND5Q7L4P6 421 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 AQP12AQ8IXF9 295 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TBC1D3Q8IZP1 549 aaPredicted RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 PQLC3Q8N755 202 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 NRG4Q8WWG1 115 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ITFG2Q969R8 447 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 AHCYL2Q96HN2 611 aaKnown RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 FCRL3Q96P31 734 aaPredicted RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 IFT27Q9BW83 186 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 IL1RAPQ9NPH3 570 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 GULP1Q9UBP9 304 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 A0A0G2JPF8 293 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 HNRNPCL3B7ZW38 293 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 M0R2N6 131 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 HOXA2O43364 376 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 OAZ2O95190 189 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 HNRNPCL4P0DMR1 293 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 GM2AP17900 193 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 CD247P20963 164 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 CXCR2P25025 360 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ARSFP54793 590 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 NFKB2Q00653 900 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 MS4A2Q01362 244 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 BNC1Q01954 994 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 MEF2AQ02078 507 aaPredicted RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 HNRNPDQ14103 355 aaKnown RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 C4orf46Q504U0 113 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 CLEC20AQ6ZU45 233 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ZFP41Q8N8Y5 198 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 OR8K3Q8NH51 312 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 C1orf216Q8TAB5 229 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 BRSK1Q8TDC3 778 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 CRELD1Q96HD1 420 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 MNTQ99583 582 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 FAM83DQ9H4H8 585 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ERVK-18Q9QC07 812 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 CORO2BQ9UQ03 480 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 MYH15Q9Y2K3 1946 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 A0A0U1RQS6 177 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 FAM234BA2RU67 622 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 FAM72CH0Y354 149 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TNFRSF10BO14763 440 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 MSCO60682 206 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 CDH1P12830 882 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 RHOQP17081 205 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ALAS2P22557 587 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 NR4A2P43354 598 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 ZNF234Q14588 700 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 MYBPC3Q14896 1274 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TIGD5Q53EQ6 642 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 FAM72AQ5TYM5 149 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 UBE2UQ5VVX9 321 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 OR2T5Q6IEZ7 315 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 FAM72DQ6L9T8 149 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 TMEM220Q6QAJ8 160 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 USP43Q70EL4 1123 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 AMIGO1Q86WK6 493 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 FAM72BQ86X60 149 aa8.49□□□□□ -1.05
RTN3-202ENST00000339997 CHERPQ8IWX8 916 aaKnown RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 C1orf52Q8N6N3 182 aaKnown RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 ENDOVQ8N8Q3 282 aaKnown RBP8.49□□□□□ -1.05
RTN3-202ENST00000339997 PDPRQ8NCN5 879 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms