RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HSD17B3P37058 310 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 GP5P40197 560 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 NPY4RP50391 375 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 B3GALT5-AS1P59052 145 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 DLK1P80370 383 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 VEZF1Q14119 521 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 C1QTNF12Q5T7M4 302 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 C20orf194Q5TEA3 1177 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 MOXD1Q6UVY6 613 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 ENPP7Q6UWV6 458 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 USP43Q70EL4 1123 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 BHLHA9Q7RTU4 235 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 ABI3BPQ7Z7G0 1075 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 MMD2Q8IY49 270 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 MARVELD2Q8N4S9 558 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 BMPERQ8N8U9 685 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 RASGEF1AQ8N9B8 481 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 Q8NFD4 153 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 TRIM58Q8NG06 486 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 VANGL1Q8TAA9 524 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-201ENST00000326004 OLIG1Q8TAK6 271 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 C9orf43Q8TAL5 461 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-201ENST00000326004 FAM162AQ96A26 154 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 FBXO17Q96EF6 278 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 GIMAP5Q96F15 307 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 FAM71F1Q96KD3 344 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-201ENST00000326004 FAM20AQ96MK3 541 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 F2RL3Q96RI0 385 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 FERMT1Q9BQL6 677 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 MGME1Q9BQP7 344 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 FZD8Q9H461 694 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 FN3KQ9H479 309 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 Q9H8V8 135 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 SLC52A3Q9NQ40 469 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 GSN-AS1Q9NRJ2 163 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 TXNDC16Q9P2K2 825 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 GRID1Q9ULK0 1009 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 NOL7Q9UMY1 257 aaKnown RBP3.04□□□□□ -1.92
HMGB1-201ENST00000326004 STUB1Q9UNE7 303 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 SNX7Q9UNH6 387 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 WDR83OSQ9Y284 106 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 A0A087WYN8 130 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 TRAV24A0A0B4J272 114 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 A0A1W2PPK0 400 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 A0A1W2PRQ8 180 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 ERVV-2B6SEH9 535 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 SLCO1B7G3V0H7 640 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 KLF11O14901 512 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 WDR46O15213 610 aaKnown RBP3.03□□□□□ -1.92
HMGB1-201ENST00000326004 TOM1O60784 492 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 SIX3O95343 332 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-201ENST00000326004 NADKO95544 446 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-201ENST00000326004 EML2O95834 649 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 PRSS56P0CW18 603 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 MT3P25713 68 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 RPL21P46778 160 aaKnown RBP3.03□□□□□ -1.92
HMGB1-201ENST00000326004 NAGLUP54802 743 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 CLDN15P56746 228 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 MZT1Q08AG7 82 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 TAF10Q12962 218 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 P2RY6Q15077 328 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 UGCGQ16739 394 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 FAM174BQ3ZCQ3 159 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 SLC35D3Q5M8T2 416 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 SUSD1Q6UWL2 747 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 PET117Q6UWS5 81 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 SH2D5Q6ZV89 423 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 SLC16A9Q7RTY1 509 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 ANKRD23Q86SG2 305 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 RTN4RL2Q86UN3 420 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 PIGZQ86VD9 579 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 TIGD4Q8IY51 512 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 LGI2Q8N0V4 545 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 EID3Q8N140 333 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 OR4K1Q8NGD4 311 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 FAM76AQ8TAV0 307 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 PROX1Q92786 737 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF501Q96CX3 271 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-201ENST00000326004 FAM129AQ9BZQ8 928 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 ZMYND12Q9H0C1 365 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 XAB2Q9HCS7 855 aaKnown RBP3.03□□□□□ -1.92
HMGB1-201ENST00000326004 CHST11Q9NPF2 352 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 FAM207AQ9NSI2 230 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-201ENST00000326004 P4HTMQ9NXG6 502 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 POLLQ9UGP5 575 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 TMED3Q9Y3Q3 217 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 RIPK3Q9Y572 518 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 CFAP43Q8NDM7 1665 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 CEP170Q5SW79 1584 aa3.03□□□□□ -1.92
HMGB1-201ENST00000326004 TEX14Q8IWB6 1497 aa3.03□□□□□ -1.93
HMGB1-201ENST00000326004 ADAMTSL3P82987 1691 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 STK36Q9NRP7 1315 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 MADDQ8WXG6 1647 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 ARHGEF37A1IGU5 675 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 HTR3EA5X5Y0 456 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 PRR23AA6NEV1 266 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 LINC01565O15544 149 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 KRT86O43790 486 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 SNX3O60493 162 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 RPS6KA5O75582 802 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms