RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 MAPK11Q15759 364 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 CLVS1Q8IUQ0 354 aaPredicted RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 MRPL43Q8N983 215 aaKnown RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 TSEN15Q8WW01 171 aaKnown RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 KLHL6Q8WZ60 621 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 OR8D2Q9GZM6 311 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 PALMDQ9NP74 551 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 HCN4Q9Y3Q4 1203 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 A0A1B0GW55 424 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 FAM72CH0Y354 149 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 TNFRSF11BO00300 401 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 TNFAIP8O95379 198 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 FHP07954 510 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 DUX4L2P0CJ85 424 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 DUX4L3P0CJ86 424 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 DUX4L4P0CJ87 422 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 DUX4L5P0CJ88 424 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 DUX4L6P0CJ89 424 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 DUX4L7P0CJ90 424 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 KRR1Q13601 381 aaKnown RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 FAM72AQ5TYM5 149 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 FAM72DQ6L9T8 149 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 PAOXQ6QHF9 649 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 TMIGD1Q6UXZ0 262 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 FAM72BQ86X60 149 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 MYDGFQ969H8 173 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 NOL6Q9H6R4 1146 aaKnown RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 HEBP1Q9NRV9 189 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 DUX4Q9UBX2 424 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 ECDO95905 644 aaPredicted RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 SERPINA1P01009 418 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 POU2F1P14859 743 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 MYOGP15173 224 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 PITX1P78337 314 aaPredicted RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 KLF10Q13118 480 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 TTC23Q5W5X9 447 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 PTCRAQ6ISU1 281 aaPredicted RBP13.17□□□□□ -0.3
RFFL-201ENST00000315249 FBXW8Q8N3Y1 598 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 GLYATL1Q969I3 302 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 SLC38A4Q969I6 547 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 TOP1MTQ969P6 601 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 CASD1Q96PB1 797 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 SLC2A11Q9BYW1 496 aa13.17□□□□□ -0.3
RFFL-201ENST00000315249 H0YGN5 161 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 H7BY64 318 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PSMD11O00231 422 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 LIN7AO14910 233 aaPredicted RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 TMEM63AO94886 807 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 LSM3P62310 102 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 C1orf189Q5VU69 101 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 NET1Q7Z628 596 aaPredicted RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 SLC34A3Q8N130 599 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 MREGQ8N565 214 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PIGXQ8TBF5 258 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 SLC5A11Q8WWX8 675 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 GTPBP3Q969Y2 492 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 ART5Q96L15 291 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PRAP1Q96NZ9 151 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 TBC1D10AQ9BXI6 508 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 WBP4O75554 376 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 GNALP38405 381 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 AP1S2P56377 157 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PTGES3Q15185 160 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 ZNF783Q6ZMS7 281 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 C1orf52Q8N6N3 182 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 RASSF5Q8WWW0 418 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 ALG2Q9H553 416 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 BATF3Q9NR55 127 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 CKLFQ9UBR5 152 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 DKKL1Q9UK85 242 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 BTN3A3O00478 584 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 LATO43561 262 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 CD70P32970 193 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 SHMT2P34897 504 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 HADHBP55084 474 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 HERVK_113P63132 956 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 MEF2AQ02078 507 aaPredicted RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 RING1Q06587 406 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 FRG2Q64ET8 278 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 REP15Q6BDI9 236 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 FRG2BQ96QU4 278 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 HIST1H2AAQ96QV6 131 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 GATA5Q9BWX5 397 aaPredicted RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 ERVK-6Q9BXR3 956 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 OR51V1Q9H2C8 321 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 TMLHEQ9NVH6 421 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 ZNF282Q9UDV7 671 aaPredicted RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 KHDRBS3O75525 346 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 S100GP29377 79 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 OTX2P32243 289 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PTGIRP43119 386 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 CHERPQ8IWX8 916 aaKnown RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 DDHD1Q8NEL9 900 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 HCSTQ9UBK5 93 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PHF11Q9UIL8 331 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 TESMINQ9Y4I5 508 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 PTPRZ1P23471 2315 aaPredicted RBP13.16□□□□□ -0.3
RFFL-201ENST00000315249 MYOCOSA0A1B0GUC4 107 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 hCG_2039718K7EN88 272 aa13.16□□□□□ -0.3
RFFL-201ENST00000315249 OAZ2O95190 189 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms