RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 LSM1O15116 133 aaKnown RBP13.65□□□□□ -0.22
SS18-201ENST00000269137 PEX11AO75192 247 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 RASGRP1O95267 797 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 MTHFD1P11586 935 aaKnown RBP13.65□□□□□ -0.22
SS18-201ENST00000269137 IDO1P14902 403 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 CD22P20273 847 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 STX1BP61266 288 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 ERVK-8P63133 956 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 EIF2B5Q13144 721 aaKnown RBP13.65□□□□□ -0.22
SS18-201ENST00000269137 FZD2Q14332 565 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 USP39Q53GS9 565 aaKnown RBP13.65□□□□□ -0.22
SS18-201ENST00000269137 FRG2Q64ET8 278 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 GRHL2Q6ISB3 625 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 DUS1LQ6P1R4 473 aaKnown RBP13.65□□□□□ -0.22
SS18-201ENST00000269137 LCTLQ6UWM7 567 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 LPCAT2Q7L5N7 544 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 IQCHQ86VS3 1027 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 HMGCLL1Q8TB92 370 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 SMPDL3AQ92484 453 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 NEIL2Q969S2 332 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 SLC6A18Q96N87 628 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 IL17FQ96PD4 163 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 FRG2BQ96QU4 278 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 HAUS8Q9BT25 410 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 RAB11FIP5Q9BXF6 653 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 PCBD2Q9H0N5 130 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 C1orf21Q9H246 121 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 ELOVL6Q9H5J4 265 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 SDR39U1Q9NRG7 319 aaPredicted RBP13.65□□□□□ -0.22
SS18-201ENST00000269137 FARSBQ9NSD9 589 aaKnown RBP13.65□□□□□ -0.22
SS18-201ENST00000269137 TAS2R1Q9NYW7 299 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 PLAGL1Q9UM63 463 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 ABCA7Q8IZY2 2146 aa13.65□□□□□ -0.22
SS18-201ENST00000269137 A6NCN8 305 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 OR52A4PA6NMU1 304 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 NPIPB8E9PQR5 432 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 H0YIV9 168 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 PSMD12O00232 456 aaPredicted RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 SCAMP1O15126 338 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 AK4P27144 223 aaPredicted RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 NDUFS1P28331 727 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 ACTR1BP42025 376 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 RAB28P51157 221 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 ACTR1AP61163 376 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 RPL6Q02878 288 aaKnown RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 EMX2Q04743 252 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 SIGLEC14Q08ET2 396 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 ATG9BQ674R7 924 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 NRROSQ86YC3 692 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 KIF2BQ8N4N8 673 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 POU5F2Q8N7G0 328 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 GPBAR1Q8TDU6 330 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 SELENOMQ8WWX9 145 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 AASDHPPTQ9NRN7 309 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.64□□□□□ -0.23
SS18-201ENST00000269137 AIG1Q9NVV5 245 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 TMEM45AQ9NWC5 275 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 SCHIP1Q9P0W5 487 aaPredicted RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 GPR45Q9Y5Y3 372 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 COLEC10Q9Y6Z7 277 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 ARHGEF17Q96PE2 2063 aaPredicted RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 CCDC163A0A0D9SF12 145 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 LOC100653049A0A140TA62 436 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 A0A1W2PR77 199 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 KDM1AO60341 852 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 KRT34O76011 436 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 PDYNP01213 254 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 EZRP15311 586 aaKnown RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 NQO1P15559 274 aaKnown RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 GPX3P22352 226 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 CPA2P48052 419 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 BLKP51451 505 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 RACK1P63244 317 aaKnown RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 ILF3Q12906 894 aaKnown RBP eCLIP13.64□□□□□ -0.23
SS18-201ENST00000269137 CYLC2Q14093 348 aaPredicted RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 KRT33BQ14525 404 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 NR6A1Q15406 480 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 MAPRE2Q15555 327 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 AP5B1Q2VPB7 878 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 PRAMEF14Q5SWL7 426 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 C10orf62Q5T681 223 aaPredicted RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 PRAMEF13Q5VWM6 474 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 CWF19L1Q69YN2 538 aaKnown RBP13.64□□□□□ -0.23
SS18-201ENST00000269137 SUSD1Q6UWL2 747 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 RINLQ6ZS11 566 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 MIER2Q8N344 545 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 CCL4L1Q8NHW4 92 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 WDR20Q8TBZ3 569 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 SLC5A11Q8WWX8 675 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 HBEGFQ99075 208 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 RTKNQ9BST9 563 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 EFCAB11Q9BUY7 163 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 TBC1D10AQ9BXI6 508 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 BRINP2Q9C0B6 783 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 KIR3DX1Q9H7L2 352 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 INVSQ9Y283 1065 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 PCDHGA11Q9Y5H2 935 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 SLCO1B1Q9Y6L6 691 aa13.64□□□□□ -0.23
SS18-201ENST00000269137 GYG2O15488 501 aa13.63□□□□□ -0.23
SS18-201ENST00000269137 EML2O95834 649 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms