RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ISL1P61371 349 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 PHC1P78364 1004 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 NFATC2Q13469 925 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 TOP3AQ13472 1001 aaPredicted RBP12.32□□□□□ -0.44
LIG1-201ENST00000263274 DEFB115Q30KQ5 88 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 RFLNAQ6ZTI6 216 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 CYP4Z1Q86W10 505 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 PSD4Q8NDX1 1056 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 LINC01599Q8WXQ3 324 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 GORASP2Q9H8Y8 452 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 DCAF13Q9NV06 445 aaKnown RBP12.32□□□□□ -0.44
LIG1-201ENST00000263274 SH3BP4Q9P0V3 963 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ZNF639Q9UID6 485 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 RIMKLBQ9ULI2 386 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 KRBA1A5PL33 1030 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ZNF840PA6NDX5 716 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 FPGTO14772 594 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 LCKP06239 509 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 HMGCLP35914 325 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 NUDT6P53370 316 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 MBTPS1Q14703 1052 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 CYP27C1Q4G0S4 372 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 RGMBQ6NW40 437 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 NCEH1Q6PIU2 408 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 APCDD1Q8J025 514 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 GPR156Q8NFN8 814 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 RHBDF1Q96CC6 855 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ZHX1-C8orf76Q96EF9 292 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 APIPQ96GX9 242 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ZNF347Q96SE7 839 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 C1QTNF3Q9BXJ4 246 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ACPTQ9BZG2 426 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 KAT8Q9H7Z6 458 aaKnown RBP12.32□□□□□ -0.44
LIG1-201ENST00000263274 ITM2CQ9NQX7 267 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 DOCK4Q8N1I0 1966 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 PGLSO95336 258 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 IGLV3-27P01718 113 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 OPN1SWP03999 348 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ENGP17813 658 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 HNF1BP35680 557 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 KIR3DL1P43629 444 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 CERS6Q6ZMG9 384 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ARL14EPQ8N8R7 260 aaPredicted RBP12.32□□□□□ -0.44
LIG1-201ENST00000263274 SETD9Q8NE22 299 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 PIK3C3Q8NEB9 887 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 WFDC5Q8TCV5 224 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 MED8Q96G25 268 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 REEP1Q9H902 201 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 ATAD3AQ9NVI7 634 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 CLIC1O00299 241 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 CNOT3O75175 753 aaKnown RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 DLGAP3O95886 979 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 VIPP01282 170 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 HOXD11P31277 338 aaPredicted RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 RCVRNP35243 200 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 ALDH7A1P49419 539 aaKnown RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 SLC13A2Q13183 592 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 SLC14A1Q13336 389 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 PTCHD3Q3KNS1 767 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 GTF2IRD2BQ6EKJ0 949 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 OR2T5Q6IEZ7 315 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 GTF2IRD2Q86UP8 949 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 OR2T29Q8NH02 315 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 NEURL2Q9BR09 285 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 REXO4Q9GZR2 422 aaKnown RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 GPN2Q9H9Y4 310 aaPredicted RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 USE1Q9NZ43 259 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 ENPP5Q9UJA9 477 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 CPQQ9Y646 472 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 GREB1Q4ZG55 1949 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 MANSC4A6NHS7 340 aaPredicted RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 RGS10O43665 173 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 POU2F1P14859 743 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 CD36P16671 472 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 BPIP17213 487 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 TNFRSF1BP20333 461 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 IRF8Q02556 426 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 ADPRMQ3LIE5 342 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 POM121L1PQ3SYA9 428 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 NIPAL1Q6NVV3 410 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 SNX20Q7Z614 316 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 RNF180Q86T96 592 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 IFNL1Q8IU54 200 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 SYTL1Q8IYJ3 562 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 CLECL1Q8IZS7 167 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 PCSK9Q8NBP7 692 aaKnown RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 GLB1L3Q8NCI6 653 aaPredicted RBP12.31□□□□□ -0.44
LIG1-201ENST00000263274 CHPT1Q8WUD6 406 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 KCNC2Q96PR1 638 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 APOL4Q9BPW4 351 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 TESMINQ9Y4I5 508 aa12.31□□□□□ -0.44
LIG1-201ENST00000263274 MYO7AQ13402 2215 aa12.3□□□□□ -0.44
LIG1-201ENST00000263274 LINC00854A0A1B0GVQ3 168 aa12.3□□□□□ -0.44
LIG1-201ENST00000263274 A8MU76 341 aa12.3□□□□□ -0.44
LIG1-201ENST00000263274 H3BNC9 293 aa12.3□□□□□ -0.44
LIG1-201ENST00000263274 H7C4K7 107 aa12.3□□□□□ -0.44
LIG1-201ENST00000263274 ERN1O75460 977 aaKnown RBP12.3□□□□□ -0.44
LIG1-201ENST00000263274 EPN2O95208 641 aa12.3□□□□□ -0.44
LIG1-201ENST00000263274 CKMP06732 381 aa12.3□□□□□ -0.44
LIG1-201ENST00000263274 INHBBP09529 407 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms