RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CERS4Q9HA82 394 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 TRPV4Q9HBA0 871 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 NEUROG3Q9Y4Z2 214 aa12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 KIF26AQ9ULI4 1882 aaPredicted RBP12.56□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM149AA5PLN7 773 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TBC1D3BA6NDS4 549 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 SAC3D1A6NKF1 404 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 E7EQ34 232 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 C1QTNF3-AMACRE9PGA6 284 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 PLK4O00444 970 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 MMP20O60882 483 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ERN1O75460 977 aaKnown RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ANXA6P08133 673 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 SDC1P18827 310 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CCT8P50990 548 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 POLE2P56282 527 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 DPTQ07507 201 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 DOC2AQ14183 400 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TMEM52BQ4KMG9 183 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 RUNDC3AQ59EK9 446 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 GRHL2Q6ISB3 625 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ERN2Q76MJ5 926 aaKnown RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TRIM74Q86UV6 250 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TRAPPC5Q8IUR0 188 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CFAP206Q8IYR0 622 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CPA6Q8N4T0 437 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 DTWD1Q8N5C7 304 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 DNAJC5GQ8N7S2 189 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 PHC3Q8NDX5 983 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ST13P5Q8NFI4 369 aaPredicted RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 OR56A3Q8NH54 315 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ITCHQ96J02 903 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF514Q96K75 400 aaPredicted RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 APOLD1Q96LR9 279 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CCDC115Q96NT0 180 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 KCNH6Q9H252 994 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TRIM39Q9HCM9 518 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 HPS4Q9NQG7 708 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 DZANK1Q9NVP4 752 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 A0A096LPI6 279 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 K7ESM1 405 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 SOCS2O14508 198 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 SLC16A8O95907 504 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CDH1P12830 882 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 HSD3B1P14060 373 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 HSD3B2P26439 372 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 IMPA1P29218 277 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 PDHA2P29803 388 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TXNL4AP83876 142 aaKnown RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 PCDH1Q08174 1060 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ATP6AP1Q15904 470 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 PGS1Q32NB8 556 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CCSMST1Q4G0I0 132 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 ZNF658BQ4V348 819 aaPredicted RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 C9orf50Q5SZB4 431 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TMTC4Q5T4D3 741 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 NOXRED1Q6NXP6 359 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 DNAJC14Q6Y2X3 702 aaPredicted RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 MMAAQ8IVH4 418 aaKnown RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 SFTPA1Q8IWL2 248 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CHERPQ8IWX8 916 aaKnown RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 TMEM132CQ8N3T6 1108 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CBR4Q8N4T8 237 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 FBXO15Q8NCQ5 510 aaPredicted RBP12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 OR10A6Q8NH74 314 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CXorf40AQ8TE69 158 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 FOXJ1Q92949 421 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 SEPHS2Q99611 448 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 SLC25A37Q9NYZ2 338 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 VPS29Q9UBQ0 182 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 MAN2B2Q9Y2E5 1009 aa12.55□□□□□ -0.4
SPTLC1-201ENST00000262554 CHD7Q9P2D1 2997 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 RNF103-CHMP3A0A140T963 221 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 ARHGAP10A1A4S6 786 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 H0YIV9 168 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 NPC1O15118 1278 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 LILRB5O75023 590 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 C1orf105O95561 183 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 LDLRP01130 860 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 CD22P20273 847 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 PRPS1L1P21108 318 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 PAX7P23759 505 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 FCARP24071 287 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 TACR1P25103 407 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 MYBPC1Q00872 1141 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 PLOD1Q02809 727 aaPredicted RBP12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 GK3PQ14409 553 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 DPY19L1Q2PZI1 675 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 FAM98BQ52LJ0 330 aaKnown RBP12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 LRIF1Q5T3J3 769 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 ATG9BQ674R7 924 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 MSANTD1Q6ZTZ1 278 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 MSRB3Q8IXL7 192 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 MFSD2AQ8NA29 543 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 WDR20Q8TBZ3 569 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 RAB7BQ96AH8 199 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 FCRL1Q96LA6 429 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 RNF145Q96MT1 663 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 CHID1Q9BWS9 393 aa12.54□□□□□ -0.4
SPTLC1-201ENST00000262554 YIPF3Q9GZM5 350 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms