RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PATE1Q8WXA2 126 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 CATSPER2Q96P56 530 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 CCDC106Q9BWC9 280 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 ZNF624Q9P2J8 865 aaPredicted RBP19.49■□□□□ 0.71
CLN3-250ENST00000636839 MYO15AQ9UKN7 3530 aa19.49■□□□□ 0.71
CLN3-250ENST00000636839 TOR1BO14657 336 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 CLDN9O95484 217 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 EBLN1P0CF75 366 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 NPPBP16860 134 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 CSNK1EP49674 416 aaKnown RBP19.48■□□□□ 0.71
CLN3-250ENST00000636839 NEK2P51955 445 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 CDC16Q13042 620 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 CHIT1Q13231 466 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 LARP4Q71RC2 724 aaKnown RBP eCLIP19.48■□□□□ 0.711e-6■□□□□ 8.2
CLN3-250ENST00000636839 TBC1D21Q8IYX1 336 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 RGL4Q8IZJ4 473 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 NEIL2Q969S2 332 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 CAMK1GQ96NX5 476 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 ACAT2Q9BWD1 397 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 TRNAU1APQ9NX07 287 aaKnown RBP19.48■□□□□ 0.71
CLN3-250ENST00000636839 POLG2Q9UHN1 485 aa19.48■□□□□ 0.71
CLN3-250ENST00000636839 TDRD6O60522 2096 aaKnown RBP19.48■□□□□ 0.71
CLN3-250ENST00000636839 A6NCN8 305 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 TMEM221A6NGB7 291 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 M0R296 226 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 VARSP26640 1264 aaKnown RBP19.47■□□□□ 0.71
CLN3-250ENST00000636839 LRP8Q14114 963 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 IL27RAQ6UWB1 636 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 RNF175Q8N4F7 328 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 TMEM105Q8N8V8 129 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 MFSD2AQ8NA29 543 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 LINC01555Q8NAE3 123 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 MAGEC3Q8TD91 643 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 SGPP1Q9BX95 441 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 TRIM33Q9UPN9 1127 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 KCNE1BA0A087WTH5 132 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 CAPN14A8MX76 684 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 WFS1O76024 890 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 MTHFD1P11586 935 aaKnown RBP19.47■□□□□ 0.71
CLN3-250ENST00000636839 HALP42357 657 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 RACK1P63244 317 aaKnown RBP19.47■□□□□ 0.71
CLN3-250ENST00000636839 CSTF1Q05048 431 aaKnown RBP19.47■□□□□ 0.71
CLN3-250ENST00000636839 BNIP1Q12981 228 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 KRT33BQ14525 404 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 CATSPEREQ5SY80 951 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 CAPN13Q6MZZ7 669 aaPredicted RBP19.47■□□□□ 0.71
CLN3-250ENST00000636839 ABRAXAS1Q6UWZ7 409 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 SLC36A4Q6YBV0 504 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 GPBAR1Q8TDU6 330 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 IER2Q9BTL4 223 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 CCDC28BQ9BUN5 200 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 PCED1AQ9H1Q7 454 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 PRMT8Q9NR22 394 aaPredicted RBP19.47■□□□□ 0.71
CLN3-250ENST00000636839 CEP192Q8TEP8 1941 aa19.47■□□□□ 0.71
CLN3-250ENST00000636839 ATXN2Q99700 1313 aaKnown RBP19.47■□□□□ 0.71
CLN3-250ENST00000636839 TLR4O00206 839 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 CCDC22O60826 627 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 PSMB5P28074 263 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 HMOX2P30519 316 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 DOC2AQ14183 400 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 XKR6Q5GH73 641 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 ADNP2Q6IQ32 1131 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 Q6ZSR9 355 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 PARGQ86W56 976 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 KLHDC8AQ8IYD2 350 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 PHACTR4Q8IZ21 702 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 CEP70Q8NHQ1 597 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 ACTRT2Q8TDY3 377 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 TUBGCP3Q96CW5 907 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 NUSAP1Q9BXS6 441 aaKnown RBP19.46■□□□□ 0.71
CLN3-250ENST00000636839 ARHGEF17Q96PE2 2063 aaPredicted RBP19.46■□□□□ 0.71
CLN3-250ENST00000636839 CLGNO14967 610 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 LAMTOR5O43504 91 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 PEX11AO75192 247 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 KIAA0754O94854 1291 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 RPN2P04844 631 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 JUNDP17535 347 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 SLC19A1P41440 591 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 IRF8Q02556 426 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 ILF3Q12906 894 aaKnown RBP eCLIP19.46■□□□□ 0.71
CLN3-250ENST00000636839 PRRT3Q5FWE3 981 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 TJAP1Q5JTD0 557 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 YTHDF3Q7Z739 585 aaKnown RBP19.46■□□□□ 0.71
CLN3-250ENST00000636839 OR52E1Q8NGJ3 308 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 DUSP15Q9H1R2 295 aaPredicted RBP19.46■□□□□ 0.71
CLN3-250ENST00000636839 TAAR2Q9P1P5 351 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 TRPS1Q9UHF7 1281 aa19.46■□□□□ 0.71
CLN3-250ENST00000636839 FANCMQ8IYD8 2048 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 MANBAO00462 879 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 ENO1P06733 434 aaKnown RBP19.45■□□□□ 0.7
CLN3-250ENST00000636839 ALDOCP09972 364 aaKnown RBP19.45■□□□□ 0.7
CLN3-250ENST00000636839 ERGP11308 486 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 MAGEA9P43362 315 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 ZRSR2Q15696 482 aaKnown RBP19.45■□□□□ 0.7
CLN3-250ENST00000636839 XKR7Q5GH72 579 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 THEMIS2Q5TEJ8 643 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 C1orf210Q8IVY1 113 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 SFRP1Q8N474 314 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 L3MBTL4Q8NA19 623 aa19.45■□□□□ 0.7
CLN3-250ENST00000636839 SLC45A3Q96JT2 553 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms