RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ZKSCAN7Q9P0L1 754 aaPredicted RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 PAK5Q9P286 719 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 UBA2Q9UBT2 640 aaPredicted RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 PGAP2Q9UHJ9 254 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 HACL1Q9UJ83 578 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 VPS28Q9UK41 221 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 SLC7A7Q9UM01 511 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 PCDHGB4Q9UN71 923 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 DLGAP4Q9Y2H0 992 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 MRPS28Q9Y2Q9 187 aaKnown RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 PTRH2Q9Y3E5 179 aaKnown RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 C2CD2Q9Y426 696 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 CMAHPQ9Y471 501 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 SPIN1Q9Y657 262 aaPredicted RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 ACEP12821 1306 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 FLT1P17948 1338 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 ITIH6Q6UXX5 1313 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 IGSF1Q8N6C5 1336 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 CPDO75976 1380 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 GPRASP1Q5JY77 1395 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 KTN1Q86UP2 1357 aaKnown RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 PARD3Q8TEW0 1356 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 ABCC12Q96J65 1359 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 ABCC11Q96J66 1382 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 ANKRD30BQ9BXX2 1392 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 RIC1Q4ADV7 1423 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 EDC4Q6P2E9 1401 aaKnown RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 SMG6Q86US8 1419 aaKnown RBP1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 SSC5DA1L4H1 1573 aa1.03□□□□□ -2.24
SMARCB1-209ENST00000635578 TNRC6BQ9UPQ9 1833 aaKnown RBP1.03□□□□□ -2.25
SMARCB1-209ENST00000635578 MYH10P35580 1976 aa1.03□□□□□ -2.25
SMARCB1-209ENST00000635578 TNFSF12-TNFSF13A0A0A6YY99 330 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 MED19A0JLT2 244 aaPredicted RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 ELOVL7A1L3X0 281 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 MEIOCA2RUB1 952 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 OR2M5A3KFT3 312 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SMIM1B2RUZ4 78 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TAF4O00268 1085 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SH2B2O14492 632 aaPredicted RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SMAD9O15198 467 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 RTL8CO15255 209 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 NDUFS4O43181 175 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SSX4O60224 188 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PCDH7O60245 1069 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 GPR137BO60478 399 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 DOK2O60496 412 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TSPAN1O60635 241 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PRAMEF11O60813 436 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 ROCK2O75116 1388 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 DAB1O75553 588 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TRMUO75648 421 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PDE9AO76083 593 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 BAIAP3O94812 1187 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 IGHV4-39P01824 125 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 INHBAP08476 426 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 ACP2P11117 423 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 LAMP2P13473 410 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 MMP9P14780 707 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 GABRB1P18505 474 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 NR1D1P20393 614 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 MSH3P20585 1137 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 CAPN3P20807 821 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 CBLP22681 906 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PON1P27169 355 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 ACTN2P35609 894 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 FLT4P35916 1363 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 HELZP42694 1942 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 RPL21P46778 160 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 NRIP1P48552 1158 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SUOXP51687 545 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PRELPP51888 382 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 STAT2P52630 851 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PDX1P52945 283 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 LBX1P52954 281 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TPD52P55327 224 aaPredicted RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 DCAF7P61962 342 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SNRPD1P62314 119 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 MRPS5P82675 430 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 RPL24P83731 157 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SP3Q02447 781 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 CREB5Q02930 508 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 DMPKQ09013 629 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 GAGE5Q13069 117 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 GAGE6Q13070 117 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PRPF4BQ13523 1007 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 EIF3AQ14152 1382 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TAF13Q15543 124 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 ASTE1Q2TB18 679 aaPredicted RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 PCGF3Q3KNV8 242 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 GCNT6Q5T4J0 391 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 MFSD4BQ5TF39 518 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 RBMS3Q6XE24 437 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 C15orf39Q6ZRI6 1047 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 SRCAPQ6ZRS2 3230 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TPRG1Q6ZUI0 275 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 DENND5BQ6ZUT9 1274 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TOM1L2Q6ZVM7 507 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 INTS8Q75QN2 995 aaKnown RBP1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 ANO5Q75V66 913 aa1.02□□□□□ -2.25
SMARCB1-209ENST00000635578 TICRRQ7Z2Z1 1910 aa1.02□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms