RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 AUTS2Q8WXX7 1259 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 LMLNQ96KR4 655 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF354BQ96LW1 612 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF778Q96MU6 729 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 CITED4Q96RK1 184 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 RAB6CQ9H0N0 254 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 FZD4Q9ULV1 537 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 PPIEQ9UNP9 301 aaKnown RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 MYO18AQ92614 2054 aaKnown RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 RIIAD1A6NNX1 92 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 FUT4P22083 530 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 PRKACGP22612 351 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 GSCP56915 257 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 PPP2R2BQ00005 443 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 IQCCQ4KMZ1 466 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 CARD16Q5EG05 197 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 SCAIQ8N9R8 606 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 OR5AK3PQ8NH89 298 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 SLC35G5Q96KT7 338 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 DERL2Q9GZP9 239 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 MOCS1Q9NZB8 636 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 A0A1W2PPW3 197 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 DNAJB1P25685 340 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 CMPK1P30085 196 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 DNAJA1P31689 397 aaKnown RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 FAM91A1Q658Y4 838 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 KLHL35Q6PF15 583 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 CMTM8Q8IZV2 173 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 GJD3Q8N144 294 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 PRR11Q96HE9 360 aaPredicted RBP13.7□□□□□ -0.22
CPSF1-212ENST00000616140 FBXL20Q96IG2 436 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 ERVW-1Q9UQF0 538 aa13.7□□□□□ -0.22
CPSF1-212ENST00000616140 M0QX08 132 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 SDHDO14521 159 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 WNT9AO14904 365 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 BEST1O76090 585 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 FOXM1Q08050 763 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 CRHR2Q13324 411 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 TYSND1Q2T9J0 566 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 CRB2Q5IJ48 1285 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF678Q5SXM1 525 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 Q6ZVU0 165 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 GPR135Q8IZ08 494 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 TRPV1Q8NER1 839 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 C12orf66Q96MD2 445 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 RIOK2Q9BVS4 552 aaKnown RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 SP140LQ9H930 580 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 MAGEE1Q9HCI5 957 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ADAP2Q9NPF8 381 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 GIN1Q9NXP7 522 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 MALT1Q9UDY8 824 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 PHF11Q9UIL8 331 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 PMF1-BGLAPU3KQ54 211 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 CITO14578 2027 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 BHMG1C9JSJ3 638 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 CLK3P49761 638 aaKnown RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ILF3Q12906 894 aaKnown RBP eCLIP13.69□□□□□ -0.223e-6■■□□□ 11.7
CPSF1-212ENST00000616140 SNAP47Q5SQN1 464 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 UBAP2Q5T6F2 1119 aaKnown RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 IRAK1BP1Q5VVH5 260 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 CCDC80Q76M96 950 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 FAM129CQ86XR2 697 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ZDHHC14Q8IZN3 488 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 KLK6Q92876 244 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF514Q96K75 400 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 TEPSINQ96N21 525 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 YTHDF1Q9BYJ9 559 aaKnown RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ITM2CQ9NQX7 267 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 COLEC10Q9Y6Z7 277 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 NALCNQ8IZF0 1738 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 XRN1Q8IZH2 1706 aaKnown RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 SLC22A1O15245 554 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 RASGRP1O95267 797 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 PAPSS2O95340 614 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 GNRH1P01148 92 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 EPOP01588 193 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 TIE1P35590 1138 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 HNMTP50135 292 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 CLCN4P51793 760 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 DGKEP52429 567 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ZNF155Q12901 538 aaPredicted RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 SCARB2Q14108 478 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 SPRED3Q2MJR0 410 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 MINDY4Q4G0A6 757 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 RBM48Q5RL73 367 aaKnown RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 PRR23CQ6ZRP0 262 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 GOLGA7Q7Z5G4 137 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 RBM18Q96H35 190 aaKnown RBP13.69□□□□□ -0.22
CPSF1-212ENST00000616140 FAM210AQ96ND0 272 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 PKP4Q99569 1192 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 TRPV5Q9NQA5 729 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 COMMD3Q9UBI1 195 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 MSRAQ9UJ68 235 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 ROBO1Q9Y6N7 1651 aa13.69□□□□□ -0.22
CPSF1-212ENST00000616140 CA12O43570 354 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 INHAP05111 366 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ABHD18Q0P651 414 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 LAPTM4AQ15012 233 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 ALG11Q2TAA5 492 aa13.68□□□□□ -0.22
CPSF1-212ENST00000616140 TPGS2Q68CL5 300 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms