RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 VPS29Q9UBQ0 182 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 C3P01024 1663 aa20.02■□□□□ 0.8
UPF1-207ENST00000599848 PSMD11O00231 422 aa20.02■□□□□ 0.79
UPF1-207ENST00000599848 SNX3O60493 162 aa20.02■□□□□ 0.79
UPF1-207ENST00000599848 IGHEP01854 428 aa20.02■□□□□ 0.79
UPF1-207ENST00000599848 DBIP07108 87 aaKnown RBP20.02■□□□□ 0.79
UPF1-207ENST00000599848 DBTP11182 482 aaKnown RBP20.02■□□□□ 0.79
UPF1-207ENST00000599848 THOC7Q6I9Y2 204 aaKnown RBP20.02■□□□□ 0.79
UPF1-207ENST00000599848 CD207Q9UJ71 328 aa20.02■□□□□ 0.79
UPF1-207ENST00000599848 GPR34Q9UPC5 381 aa20.02■□□□□ 0.79
UPF1-207ENST00000599848 MED1Q15648 1581 aaPredicted RBP20.01■□□□□ 0.79
UPF1-207ENST00000599848 RLN1P04808 185 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 NRF1Q16656 503 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 FBXL22Q6P050 247 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 FSTL5Q8N475 847 aaPredicted RBP20.01■□□□□ 0.79
UPF1-207ENST00000599848 C7orf26Q96N11 449 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 ENO4A6NNW6 628 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 A8MU76 341 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 ZNF3P17036 446 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 CYP4F3Q08477 520 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 Q6ZVU0 165 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 CENPSQ8N2Z9 138 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 ARL10Q8N8L6 244 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 AUTS2Q8WXX7 1259 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 FUCA2Q9BTY2 467 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 DEFB126Q9BYW3 111 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 ENPP3O14638 875 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 TNFRSF21O75509 655 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 GSRP00390 522 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 IL12AP29459 219 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 ZC3HC1Q86WB0 502 aaKnown RBP20.01■□□□□ 0.79
UPF1-207ENST00000599848 OR2T34Q8NGX1 318 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 OR2T3Q8NH03 318 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 TMEM121BQ9BXQ6 578 aaPredicted RBP20.01■□□□□ 0.79
UPF1-207ENST00000599848 SH3PXD2BA1X283 911 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 UNC5CO95185 931 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 DRD4P21917 467 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 AQP1P29972 269 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 OR3A3P47888 321 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 OR3A2P47893 321 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 GBX2P52951 348 aaPredicted RBP20.01■□□□□ 0.79
UPF1-207ENST00000599848 LAPTM4BQ86VI4 370 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 CMKLR1Q99788 373 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 MVB12BQ9H7P6 319 aa20.01■□□□□ 0.79
UPF1-207ENST00000599848 MTMR11A4FU01 709 aa20■□□□□ 0.79
UPF1-207ENST00000599848 DNAJB1P25685 340 aa20■□□□□ 0.79
UPF1-207ENST00000599848 ABATP80404 500 aa20■□□□□ 0.79
UPF1-207ENST00000599848 GRM2Q14416 872 aa20■□□□□ 0.79
UPF1-207ENST00000599848 TMPPEQ6ZT21 453 aa20■□□□□ 0.79
UPF1-207ENST00000599848 RTL10Q7L3V2 364 aa20■□□□□ 0.79
UPF1-207ENST00000599848 TMCO2Q7Z6W1 182 aaPredicted RBP20■□□□□ 0.79
UPF1-207ENST00000599848 NPLOC4Q8TAT6 608 aa20■□□□□ 0.79
UPF1-207ENST00000599848 SLC22A8Q8TCC7 542 aa20■□□□□ 0.79
UPF1-207ENST00000599848 CYB5D2Q8WUJ1 264 aa20■□□□□ 0.79
UPF1-207ENST00000599848 SLC25A36Q96CQ1 311 aa20■□□□□ 0.79
UPF1-207ENST00000599848 ST6GALNAC1Q9NSC7 600 aaPredicted RBP20■□□□□ 0.79
UPF1-207ENST00000599848 COL20A1Q9P218 1284 aa20■□□□□ 0.79
UPF1-207ENST00000599848 RARRES3Q9UL19 164 aa20■□□□□ 0.79
UPF1-207ENST00000599848 CYP8B1Q9UNU6 501 aa20■□□□□ 0.79
UPF1-207ENST00000599848 ITGA10O75578 1167 aa20■□□□□ 0.79
UPF1-207ENST00000599848 OR4F21O95013 312 aa20■□□□□ 0.79
UPF1-207ENST00000599848 FAM153BP0C7A2 387 aa20■□□□□ 0.79
UPF1-207ENST00000599848 LMO2P25791 158 aa20■□□□□ 0.79
UPF1-207ENST00000599848 CEP97Q8IW35 865 aa20■□□□□ 0.79
UPF1-207ENST00000599848 CNDP2Q96KP4 475 aaKnown RBP20■□□□□ 0.79
UPF1-207ENST00000599848 IRF2BPLQ9H1B7 796 aa20■□□□□ 0.79
UPF1-207ENST00000599848 SLC6A9P48067 706 aa20■□□□□ 0.79
UPF1-207ENST00000599848 BTN3A2P78410 334 aa20■□□□□ 0.79
UPF1-207ENST00000599848 SERINC3Q13530 473 aa20■□□□□ 0.79
UPF1-207ENST00000599848 PLXDC1Q8IUK5 500 aa20■□□□□ 0.79
UPF1-207ENST00000599848 PYDC1Q8WXC3 89 aa20■□□□□ 0.79
UPF1-207ENST00000599848 NDRG1Q92597 394 aaKnown RBP20■□□□□ 0.79
UPF1-207ENST00000599848 DAZLQ92904 295 aaKnown RBP20■□□□□ 0.79
UPF1-207ENST00000599848 DCUN1D5Q9BTE7 237 aa20■□□□□ 0.79
UPF1-207ENST00000599848 RGS10O43665 173 aa20■□□□□ 0.79
UPF1-207ENST00000599848 PPP1R11O60927 126 aaPredicted RBP20■□□□□ 0.79
UPF1-207ENST00000599848 CSTBP04080 98 aaKnown RBP20■□□□□ 0.79
UPF1-207ENST00000599848 RLN2P04090 185 aa20■□□□□ 0.79
UPF1-207ENST00000599848 C5orf22Q49AR2 442 aa20■□□□□ 0.79
UPF1-207ENST00000599848 LY6G5CQ5SRR4 150 aa20■□□□□ 0.79
UPF1-207ENST00000599848 SPATA22Q8NHS9 363 aa20■□□□□ 0.79
UPF1-207ENST00000599848 PPM1MQ96MI6 270 aa20■□□□□ 0.79
UPF1-207ENST00000599848 LRRC4CQ9HCJ2 640 aa20■□□□□ 0.79
UPF1-207ENST00000599848 MMP20O60882 483 aa20■□□□□ 0.79
UPF1-207ENST00000599848 GADD45GO95257 159 aa20■□□□□ 0.79
UPF1-207ENST00000599848 PITRM1Q5JRX3 1037 aa20■□□□□ 0.79
UPF1-207ENST00000599848 AADACL2Q6P093 401 aa20■□□□□ 0.79
UPF1-207ENST00000599848 NANOGNBQ7Z5D8 188 aa20■□□□□ 0.79
UPF1-207ENST00000599848 FAM86B1Q8N7N1 296 aa20■□□□□ 0.79
UPF1-207ENST00000599848 NIPA2Q8N8Q9 360 aa20■□□□□ 0.79
UPF1-207ENST00000599848 SLC39A3Q9BRY0 314 aa20■□□□□ 0.79
UPF1-207ENST00000599848 HERC2P3Q9BVR0 1158 aa20■□□□□ 0.79
UPF1-207ENST00000599848 EBF3Q9H4W6 596 aa20■□□□□ 0.79
UPF1-207ENST00000599848 RC3H2Q9HBD1 1191 aaKnown RBP20■□□□□ 0.79
UPF1-207ENST00000599848 TAS2R7Q9NYW3 318 aa20■□□□□ 0.79
UPF1-207ENST00000599848 EIF2B4Q9UI10 523 aaKnown RBP20■□□□□ 0.79
UPF1-207ENST00000599848 TMEM5Q9Y2B1 443 aa20■□□□□ 0.79
UPF1-207ENST00000599848 HAS3O00219 553 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 ANXA8P13928 327 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 JUPP14923 745 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms