RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 FAM96AQ9H5X1 160 aa9.68□□□□□ -0.86
TRIM28-210ENST00000597618 RIC8BQ9NVN3 520 aa9.68□□□□□ -0.86
TRIM28-210ENST00000597618 SAE1Q9UBE0 346 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-210ENST00000597618 ZNF282Q9UDV7 671 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-210ENST00000597618 TRHDEQ9UKU6 1024 aa9.68□□□□□ -0.86
TRIM28-210ENST00000597618 PLAGL1Q9UM63 463 aa9.68□□□□□ -0.86
TRIM28-210ENST00000597618 MEMO1Q9Y316 297 aa9.68□□□□□ -0.86
TRIM28-210ENST00000597618 NEU2Q9Y3R4 380 aa9.68□□□□□ -0.86
TRIM28-210ENST00000597618 MAU2Q9Y6X3 613 aa9.68□□□□□ -0.86
TRIM28-210ENST00000597618 NCOA6Q14686 2063 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ZNF469Q96JG9 3925 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 TRBV5-4A0A0C4DH59 114 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 A0A1B0GTH6 734 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 OR5H15A6NDH6 313 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 QSOX1O00391 747 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ANXA9O76027 345 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ZGLP1P0C6A0 271 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 TPBGLP0DKB5 382 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 CD99P14209 185 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 PECAM1P16284 738 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 CXCR2P25025 360 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 MCM3P25205 808 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 PKLRP30613 574 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 MC4RP32245 332 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 GEMP55040 296 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 CSNK1G2P78368 415 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 PLOD1Q02809 727 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 MESDQ14696 234 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 SYTL3Q4VX76 610 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 TFDP3Q5H9I0 405 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ABHD17BQ5VST6 288 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 LRRC38Q5VT99 294 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 PRMT9Q6P2P2 845 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 MEX3BQ6ZN04 569 aaKnown RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 Q6ZPB1 254 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 PRSS58Q8IYP2 241 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 CLDN19Q8N6F1 224 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ADAMTS18Q8TE60 1221 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 RNF25Q96BH1 459 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ZNF285Q96NJ3 590 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 QKIQ96PU8 341 aaKnown RBP eCLIP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 TREX2Q9BQ50 279 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 NAT10Q9H0A0 1025 aaKnown RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 GBA3Q9H227 469 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ZNF304Q9HCX3 659 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 DDX56Q9NY93 547 aaKnown RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-210ENST00000597618 NENFQ9UMX5 172 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 KLHL20Q9Y2M5 609 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 ZNF835Q9Y2P0 537 aa9.67□□□□□ -0.86
TRIM28-210ENST00000597618 IGHV1-45A0A0A0MS14 117 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 CST8O60676 142 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 S1PR4O95977 384 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 FTH1P02794 183 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 ZBED6P86452 979 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 PMP22Q01453 160 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 SRSF11Q05519 484 aaKnown RBP9.66□□□□□ -0.86
TRIM28-210ENST00000597618 EEF1A2Q05639 463 aaKnown RBP9.66□□□□□ -0.86
TRIM28-210ENST00000597618 KRTCAP3Q53RY4 240 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 ITPRIPL1Q6GPH6 555 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 RANBP10Q6VN20 620 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 TAS2R42Q7RTR8 314 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 SERPINA9Q86WD7 417 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 SPPL2CQ8IUH8 684 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 TMTC1Q8IUR5 882 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 MMP21Q8N119 569 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 PHF10Q8WUB8 498 aaKnown RBP9.66□□□□□ -0.86
TRIM28-210ENST00000597618 ELMO1Q92556 727 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 P3H4Q92791 437 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 GPR137Q96N19 417 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 TMUB1Q9BVT8 246 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 TEKT2Q9UIF3 430 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 FAM169AQ9Y6X4 670 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 ACANP16112 2415 aa9.66□□□□□ -0.86
TRIM28-210ENST00000597618 IGLV3-12A0A075B6K2 115 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 A0A1B0GTL3 188 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 HYKKA2RU49 373 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 FAM221AA4D161 298 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 HACD1B0YJ81 288 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 IDSB3KWA1 339 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 CCL22O00626 93 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 SRPX2O60687 465 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 FAM155BO75949 473 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ZRANB2O95218 330 aaKnown RBP eCLIP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 FKBP9O95302 570 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 RPN2P04844 631 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ICAM2P13598 275 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 DRD2P14416 443 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 FBLP22087 321 aaKnown RBP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ADRA1AP35348 466 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 GRIA3P42263 894 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ARHGAP25P42331 645 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 CDKN2BP42772 138 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 CDKN1CP49918 316 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 EMP2P54851 167 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 VSX2P58304 361 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ZNF33BQ06732 778 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 BRD3Q15059 726 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 DNAJC21Q5F1R6 531 aaKnown RBP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ZNF766Q5HY98 468 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms