RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 KLF7O75840 302 aaPredicted RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 USP1O94782 785 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 MATN4O95460 622 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 HBQ1P09105 142 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 PKMP14618 531 aaKnown RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 MCM3P25205 808 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 CASRP41180 1078 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 CLCN7P51798 805 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 YBX1P67809 324 aaKnown RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 FASTKQ14296 549 aaKnown RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 SLC9A5Q14940 896 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 NEPROQ6NW34 567 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 ZNF549Q6P9A3 640 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 SDCCAG8Q86SQ7 713 aaPredicted RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 ZBTB2Q8N680 514 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 PROKR1Q8TCW9 393 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 SKA2Q8WVK7 121 aaPredicted RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 RAD51AP1Q96B01 352 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 SIGLEC10Q96LC7 697 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 NAP1L3Q99457 506 aaPredicted RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 DPH2Q9BQC3 489 aaPredicted RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 DDX47Q9H0S4 455 aaKnown RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 CLMPQ9H6B4 373 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 SLC22A11Q9NSA0 550 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 EURLQ9NYK6 297 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 SPATA7Q9P0W8 599 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 SLC39A10Q9ULF5 831 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 SRPK3Q9UPE1 567 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 AP1M2Q9Y6Q5 423 aa12.54□□□□□ -0.4
LIG1-212ENST00000596549 ASH1LQ9NR48 2969 aaKnown RBP12.54□□□□□ -0.4
LIG1-212ENST00000596549 SDR42E2A6NKP2 422 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 C9J4A7 227 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 H3BMM5 538 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 ZSCAN12O43309 604 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 CTSVO60911 334 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 PSIP1O75475 530 aaKnown RBP12.53□□□□□ -0.4
LIG1-212ENST00000596549 BANF1O75531 89 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 ATXN8OSP0DMR3 200 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 GRIA3P42263 894 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 CSRP3P50461 194 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 MPP1Q00013 466 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 CTBP1Q13363 440 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 CUL1Q13616 776 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 ATP1A4Q13733 1029 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 KLHL38Q2WGJ6 581 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 MRPL14Q6P1L8 145 aaKnown RBP12.53□□□□□ -0.4
LIG1-212ENST00000596549 TLDC1Q6P9B6 456 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 PPIL6Q8IXY8 311 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 DTWD1Q8N5C7 304 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 OR2L3Q8NG85 312 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 OR2A1Q8NGT9 310 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 GSDMBQ8TAX9 411 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 GRK7Q8WTQ7 553 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 SLC22A18Q96BI1 424 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 ZNF285Q96NJ3 590 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 ING2Q9H160 280 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 SYNPO2LQ9H987 977 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 MLXIPLQ9NP71 852 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 SLC6A20Q9NP91 592 aa12.53□□□□□ -0.4
LIG1-212ENST00000596549 RELNP78509 3460 aa12.52□□□□□ -0.4
LIG1-212ENST00000596549 MAST4O15021 2626 aa12.52□□□□□ -0.4
LIG1-212ENST00000596549 GOLGA6L10A0A0M3HER8 536 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 E5RI56 91 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 MYO1CO00159 1063 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 DNALI1O14645 258 aaPredicted RBP12.52□□□□□ -0.41
LIG1-212ENST00000596549 FANCGO15287 622 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 CEACAM4O75871 244 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 MED26O95402 600 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 CHRM3P20309 590 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 AGXTP21549 392 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 CCNFP41002 786 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 KLRB1Q12918 225 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 PTK6Q13882 451 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 CRYMQ14894 314 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 SF1Q15637 639 aaKnown RBP12.52□□□□□ -0.41
LIG1-212ENST00000596549 CYP2A13Q16696 494 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 FRMPD2BQ6IN97 320 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 FIGLAQ6QHK4 219 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 ASB18Q6ZVZ8 466 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 COX15Q7KZN9 410 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 RNF44Q7L0R7 432 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 MRGPREQ86SM8 312 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 CD200R1Q8TD46 325 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 KCNJ9Q92806 393 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 SLCO2A1Q92959 643 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 MIPEPQ99797 713 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 WDR83Q9BRX9 315 aaKnown RBP12.52□□□□□ -0.41
LIG1-212ENST00000596549 DHRS4Q9BTZ2 278 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 PLAC1Q9HBJ0 212 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 ACSS2Q9NR19 701 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 ENAMQ9NRM1 1142 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 TXLNGQ9NUQ3 528 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 IRAK4Q9NWZ3 460 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.52□□□□□ -0.41
LIG1-212ENST00000596549 PADI2Q9Y2J8 665 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 PCDHGA9Q9Y5G4 932 aaKnown RBP12.52□□□□□ -0.41
LIG1-212ENST00000596549 KLK4Q9Y5K2 254 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 MRFAP1Q9Y605 127 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 MAD1L1Q9Y6D9 718 aa12.52□□□□□ -0.41
LIG1-212ENST00000596549 A0A1B0GX78 115 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms